词条 | Open science data |
释义 |
Open science data is a type of open data focused on publishing observations and results of scientific activities available for anyone to analyze and reuse. A major purpose of the drive for open data is to allow the verification of scientific claims, by allowing others to look at the reproducibility of results,[1] and to allow data from many sources to be integrated to give new knowledge. While the idea of open science data has been actively promoted since the 1950s, the rise of the Internet has significantly lowered the cost and time required to publish or obtain data. HistoryThe concept of open access to scientific data was institutionally established with the formation of the World Data Center system (now the World Data System), in preparation for the International Geophysical Year of 1957–1958.[2] The International Council of Scientific Unions (now the International Council for Science) established several World Data Centers to minimize the risk of data loss and to maximize data accessibility, further recommending in 1955 that data be made available in machine-readable form.[3] The first initiative to create a database of electronic bibliography of open access data was the Educational Resources Information Center (ERIC) in 1966. In the same year, MEDLINE was created – a free access online database managed by the National Library of Medicine and the National Institute of Health (USA) with bibliographical citations from journals in the biomedical area, which later would be called PubMed, currently with over 14 million complete articles.[4] In 1995 GCDIS (US) put its position clearly in On the Full and Open Exchange of Scientific Data (A publication of the Committee on Geophysical and Environmental Data - National Research Council): {{quote|text="The Earth's atmosphere, oceans, and biosphere form an integrated system that transcends national boundaries. To understand the elements of the system, the way they interact, and how they have changed with time, it is necessary to collect and analyze environmental data from all parts of the world. Studies of the global environment require international collaboration for many reasons:
International programs for global change research and environmental monitoring crucially depend on the principle of full and open data exchange (i.e., data and information are made available without restriction, on a non-discriminatory basis, for no more than the cost of reproduction and distribution)." [5]}} The last phrase highlights the traditional cost of disseminating information by print and post. It is the removal of this cost through the Internet which has made data vastly easier to disseminate technically. It is correspondingly cheaper to create, sell and control many data resources and this has led to the current concerns over non-open data. More recent uses of the term include:
In 2004, the Science Ministers of all nations of the OECD (Organisation for Economic Co-operation and Development), which includes most developed countries of the world, signed a declaration which essentially states that all publicly funded archive data should be made publicly available.[19] Following a request and an intense discussion with data-producing institutions in member states, the OECD published in 2007 the OECD Principles and Guidelines for Access to Research Data from Public Funding as a soft-law recommendation.[20] In 2005 Edd Dumbill introduced an “Open Data” theme in XTech, including:
In 2006 Science Commons[21] ran a 2-day conference in Washington where the primary topic could be described as Open Data. It was reported that the amount of micro-protection of data (e.g. by license) in areas such as biotechnology was creating a Tragedy of the anticommons. In this the costs of obtaining licenses from a large number of owners made it uneconomic to do research in the area. In 2007 SPARC and Science Commons announced a consolidation and enhancement of their author addenda.[22] In 2007 the OECD (Organisation for Economic Co-operation and Development) published the Principles and Guidelines for Access to Research Data from Public Funding.[23] The Principles state that: Access to research data increases the returns from public investment in this area; reinforces open scientific inquiry; encourages diversity of studies and opinion; promotes new areas of work and enables the exploration of topics not envisioned by the initial investigators. In 2010 the Panton Principles launched,[24] advocating Open Data in science and setting out for principles to which providers must comply to have their data Open. In 2011 LinkedScience.org was launched to realize the approach of the Linked Open Science[25] to openly share and interconnect scientific assets like datasets, methods, tools and vocabularies. In 2012, the Royal Society published a major report, "Science as an Open Enterprise"[26], advocating open scientific data and considering its benefits and requirements. In 2013 the G8 Science Ministers released a Statement[27] supporting a set of principles for open scientific research data In 2015 the World Data System of the International Council for Science adopted a new set of Data Sharing Principles[28][29] to embody the spirit of 'open science'. These Principles are in line with data policies of national and international initiatives and they express core ethical commitments operationalized in the WDS Certification of trusted data repositories and service. Relation to open accessMuch data is made available through scholarly publication, which now attracts intense debate under "Open Access" and semantically open formats – like to offer the scientific articles in JATS format. The Budapest Open Access Initiative (2001) coined this term:
The logic of the declaration permits re-use of the data although the term "literature" has connotations of human-readable text and can imply a scholarly publication process. In Open Access discourse the term "full-text" is often used which does not emphasize the data contained within or accompanying the publication. Some Open Access publishers do not require the authors to assign copyright and the data associated with these publications can normally be regarded as Open Data. Some publishers have Open Access strategies where the publisher requires assignment of the copyright and where it is unclear that the data in publications can be truly regarded as Open Data. The ALPSP and STM publishers have issued a statement about the desirability of making data freely available:[30]
and
Even though this statement was without any effect on the open availability of primary data related to publications in journals of the ALPSP and STM members. Data tables provided by the authors as supplement with a paper are still available to subscribers only. Relation to peer reviewIn an effort to address issues with the reproducibility of research results, some scholars are asking that authors agree to share their raw data as part of the scholarly peer review process.[31] As far back as 1962, for example, a number of psychologists have attempted to obtain raw data sets from other researchers, with mixed results, in order to reanalyze them. A recent attempt resulted in only seven data sets out of fifty requests. The notion of obtaining, let alone requiring, open data as a condition of peer review remains controversial.[32] Open research computation{{main article|Open research computation}}To make sense of scientific data they must be analysed. In all but the simplest cases, this is done by software. The extensive use of software poses problems for the reproducibility of research. To keep research reproducible, it is necessary to publish not only all data, but also the source code of all software used, and all the parametrization used in running this software. Presently, these requests are rarely ever met. Ways to come closer to reproducible scientific computation are discussed under the catchword "open research computation". See also
References1. ^Spiegelhalter, D. Open data and trust in the literature. The Scholarly Kitchen. Retrieved 7 September 2018. 2. ^{{cite book|last=Committee on Scientific Accomplishments of Earth Observations from Space, National Research Council|title=Earth Observations from Space: The First 50 Years of Scientific Achievements|year=2008|publisher=The National Academies Press|isbn=978-0-309-11095-2|page=6|url=http://books.nap.edu/openbook.php?record_id=11991&page=6 |accessdate=2010-11-24}} 3. ^{{cite web|last=World Data Center System|title=About the World Data Center System|url=http://www.ngdc.noaa.gov/wdc/about.shtml|publisher=NOAA, National Geophysical Data Center|accessdate=2010-11-24|date=2009-09-18}} 4. ^[https://www.academia.edu/download/38678263/Open_Science_open_issues_Digital.pdf#page=190 Machado, Jorge. "Open data and open science". In Albagli, Maciel, Abdo. "Open Science, Open Questions", 2015] 5. ^{{Cite book|url=https://www.nap.edu/catalog/18769/on-the-full-and-open-exchange-of-scientific-data|title=On the Full and Open Exchange of Scientific Data|last=National Research Council|publisher=The National Academies Press|year=1995|isbn=978-0-309-30427-6|location=Washington, DC|pages=|language=en|doi=10.17226/18769}} 6. ^{{cite web|url=http://mercury.ornl.gov/safari2k/s2kpolicy.pdf |title=Safari 2000 Data Policy |accessdate=May 28, 2011 |deadurl=yes |archiveurl=https://web.archive.org/web/20060929080333/http://mercury.ornl.gov/safari2k/s2kpolicy.pdf |archivedate=September 29, 2006 }} 7. ^{{cite web|url=http://www.oreillynet.com/pub/a/network/2002/04/05/kent.html|author=Bruce Stewart|title=Keeping Genome Data Open;An Interview with Jim Kent|year=2002}} 8. ^Open Data Consortium ca. 2003 9. ^Peter Murray-Rust, Henry Rzepa 2004 10. ^"Open Data" at CERN Workshop on Innovations in Scholarly Communication (OAI4) Peter Murray-Rust, 2005 11. ^Report on Science Commons Dec 2004 12. ^Open Knowledge Forums 13. ^http://www.crystallography.net/ 14. ^Semantic Web Data Integration with hCalendar and GRDDL; Dan Connolly | From Syntax to Semantics (XML 2005) Atlanta, GA, USA 15. ^SPARC Open Data Mailing list 16. ^ 17. ^XTech 2005 18. ^Tim Bray and Tim O'Reilly 19. ^OECD Declaration on Open Access to publicly funded data {{webarchive|url=https://web.archive.org/web/20100420102950/http://www.oecd.org/document/0%2C2340%2Cen_2649_34487_25998799_1_1_1_1%2C00.html |date=20 April 2010 }} 20. ^OECD Principles and Guidelines for Access to Research Data from Public Funding 21. ^Science Commons in Washington 2006 22. ^[https://mx2.arl.org/Lists/SPARC-OAForum/Message/3767.html SPARC-OAF forum] 23. ^{{cite web|title=OECD Principles and Guidelines for Access to Research Data from Public Funding|url=http://www.oecd.org/sti/sci-tech/oecdprinciplesandguidelinesforaccesstoresearchdatafrompublicfunding.htm|website=OECD}} 24. ^Launch of the Panton Principles for Open Data in Science and 'Is It Open Data?' Web Service 25. ^{{Cite journal | last1 = Kauppinen | first1 = T. | last2 = Espindola | first2 = G. M. D. | doi = 10.1016/j.procs.2011.04.076 | title = Linked Open Science-Communicating, Sharing and Evaluating Data, Methods and Results for Executable Papers | journal = Procedia Computer Science | volume = 4 | pages = 726–731 | year = 2011 | pmid = | pmc = }} 26. ^{{Cite web|url=https://royalsociety.org/topics-policy/projects/science-public-enterprise/report/|title=Final report - Science as an open enterprise|website=royalsociety.org|language=en-gb|access-date=2017-09-29}} 27. ^{{cite news|title=G8 Science Ministers Statement|url=https://www.gov.uk/government/news/g8-science-ministers-statement|publisher=Foreign & Commonwealth Office}} 28. ^{{cite news|title=Global Data Organization Adopts Open Data Sharing Principles|url=http://www.alphagalileo.org/ViewItem.aspx?ItemId=159210&CultureCode=en|accessdate=8 January 2016|publisher=AlphaGalileo}} 29. ^{{cite journal|title=World Data System (WDS) Data Sharing Principles|doi=10.5281/zenodo.34354|year=2015|last1=Emerson|first1=Claudia|last2=Faustman|first2=Elaine M.|last3=Mokrane|first3=Mustapha|last4=Harrison|first4=Sandy}} 30. ^A statement by the Association of Learned and Professional Society Publishers (ALPSP) and the International Association of Scientific, Technical and Medical Publishers (STM), Association of Learned and Professional Society Publishers 31. ^{{cite web |title=The PRO Initiative for Open Science |url=https://opennessinitiative.org/ |website=Peer Reviewers' Openness Initiative |accessdate=15 September 2018}} 32. ^{{cite journal |last1=Witkowski |first1=Tomasz |authorlink1=Tomasz Witkowski |title=A Scientist Pushes Psychology Journals toward Open Data |journal=Skeptical Inquirer |date=2017 |volume=41 |issue=4 |pages=6–7 |url=https://web.archive.org/web/20180915205014/https://forbiddenpsychology.wordpress.com/2017/07/29/a-scientist-pushes-psychology-journals-toward-open-data/}} }} External links
2 : Open data|Open science |
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