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词条 Terri Attwood
释义

  1. Education

  2. Research and career

     Teaching  Academic service  Awards and honours 

  3. References

{{Infobox scientist
| name = Terri Attwood
| birth_name = Teresa K. Attwood
| image = AttwoodTerri.jpeg
| alt =
| caption = Portrait of Terri Attwood by Linda Bussey
| birth_date = {{Birth date and age|1959|11|20}}[1]
| birth_place =
| death_date =
| death_place =
| resting_place =
| resting_place_coordinates =
| residence =
| citizenship =
| nationality =
| fields = Bioinformatics
Protein fingerprinting
| workplaces = {{Plainlist|
  • University of Manchester
  • University College London
  • University of Leeds
  • EMBL-EBI}}

| alma_mater = University of Leeds
| thesis_title = Chromonic mesophases
| thesis_url = http://lib.leeds.ac.uk/record=b1031692
| thesis_year = 1984
| doctoral_advisor = John E. Lydon[2]
| academic_advisors =
| doctoral_students =
| notable_students =
| known_for = {{Plainlist|
  • PRINTS database
  • UTOPIA tools}}

| influences =
| influenced =
| awards = Royal Society University Research Fellowship {{small|1993-2002}}[3]
| signature =
| signature_alt =
| website = {{Plainlist|
  • {{URL|http://www.bioinf.manchester.ac.uk/dbbrowser}}
  • {{URL|manchester.ac.uk/research/fls/Teresa.k.attwood}}}}

| footnotes =
| spouse =

}}Teresa K. Attwood is a Professor of Bioinformatics in the School of Computer Science and School of Biological Sciences at the University of Manchester and a visiting fellow at the European Bioinformatics Institute (EMBL-EBI).[2] She held a Royal Society University Research Fellowship at University College London (UCL) from 1993 to 1999 and at the University of Manchester from 1999 to 2002.[3]

Education

Attwood gained her Bachelor of Science in Biophysics from the University of Leeds in 1982.[6] She was awarded a PhD, also in Biophysics, two years later, in 1984[4] under the supervision of John E. Lydon[5] studying chromonic mesophases.

Research and career

Attwood undertook postdoctoral research at Leeds until 1993, when she moved to University College London[6] for five years before moving to the University of Manchester in 1999. Her research[7][8] concerns protein sequence alignment and protein analysis.

Inspired by the creation of PROSITE, Attwood developed a method of protein fingerprinting and used this to establish the PRINTS[9][10][11] database. With Amos Bairoch she sought to unify work on protein family classification and annotation, eventually jointly securing a European Union grant with Rolf Apweiler to establish InterPro,[12][13] with Pfam, ProDom and Swiss-Prot/TrEMBL as consortium partners in 1997.[17]

Attwood has led major projects including the BioMinT FP5[14] text-mining consortium, the EMBER[15] bioinformatics education consortium (including EBI and Swiss Institute of Bioinformatics as partners), and the EPSRC PARADIGM Platform.[16] She is the Manchester principal investigator on projects SeqAhead (Next-generation sequencing data analysis network)[17] and AllBio (bioinformatics infrastructure for unicellular, animal and plant sciences),[18] and was also Manchester PI on EMBRACE[19] and EuroKUP (kidney and urine proteomics).[20] Attwood was a member of ELIXIR’s Bioinformatics Training Strategy Committee (Work Package 11)[21] during ELIXIR's preparatory phase. She is currently Chair of the EMBnet Global Bioinformatics Network, she was a member of the Executive Committees of the International Society for Biocuration, and the Bioinformatics Training Network, and was recently elected to the Board of Directors of the International Society for Computational Biology. In 2012, she spearheaded the establishment of a GOBLET (Global Organisation for Bioinformatics Learning, Education and Training), with the major bioinformatics, computational biology and biocuration societies, networks and organisations as partners. {{As of|2016}}, Attwood is the Chair of the GOBLET Executive Board.[22]

As well as being a biocurator[23][24] she has co-developed tools to align and visualise protein sequences and structures, including Ambrosia and CINEMA.[25][26] The group are building re-usable software components to create useful bioinformatics applications through UTOPIA (Bioinformatics tools),[27][28] and are developing new approaches for automatic annotation and text mining, like PRECIS,[29] METIS,[30] BioIE,[31] and semantic approaches to data integration,[32] such as the Semantic Biochemical Journal[33] published by Portland Press. The UTOPIA tools underpin both the Semantic Biochemical Journal and a collaborative project with Pfizer and AstraZeneca to develop a 21st-century interface to biomedical literature and data management.

Attwood's research has received funding from the Engineering and Physical Sciences Research Council,[34] the Biotechnology and Biological Sciences Research Council, the Wellcome Trust, the Royal Society, the European Union and industry.[35]

Teaching

Attwood teaches on undergraduate and postgraduate courses and has been doctoral advisor or co-supervisor to several PhD students. Attwood has co-authored several book chapters and three popular bioinformatics textbooks: Introduction to Bioinformatics[36] and Bioinformatics and Molecular Evolution.[37]

Attwood is a co-author of the bioinformatics textbook Bioinformatics Challenges at the Interface of Biology and Computer Science: Mind the Gap[38] with Steve Pettifer and Dave Thorne.

Academic service

Attwood serves on the editorial board of the Biochemical Journal,[39] Database: The Journal of Biological Databases and Curation,[40] Molecular and Cellular Proteomics,{{citation needed|date=March 2017}} the Journal of Molecular Graphics and Modelling and the EMBnet.journal.{{citation needed|date=March 2017}}

Awards and honours

Attwood held a Royal Society University Research Fellowship (URF) from 1993 to 2002.[3]

References

1. ^{{LCAuth|nb91269393|Teresa Attwood||}}
2. ^{{Scopus|name=Attwood, Teresa}}
3. ^1 2 {{cite web|url=https://www.research.manchester.ac.uk/portal/teresa.k.attwood.html|website=manchester.ac.uk|location=Manchester|author=Anon|year=2016|title=Teresa Attwood Professor of Bioinformatics|archiveurl=https://web.archive.org/web/20161224113224/https://www.research.manchester.ac.uk/portal/teresa.k.attwood.html|archivedate=2016-12-24}}
4. ^1 {{cite thesis|degree=PhD|first=Teresa K. |last=Attwood|title=Chromonic mesophases|publisher=University of Leeds|date=1984|authorlink=Terri Attwood|url=http://lib.leeds.ac.uk/record=b1031692|oclc=59334329}}
5. ^{{Cite journal | last1 = Attwood | first1 = T. K. | authorlink = Terri Attwood| last2 = Lydon | first2 = J. E. | doi = 10.1080/00268948408078686 | title = Lyotropic Mesophase Formation by Anti-Asthmatic Drugs | journal = Molecular Crystals and Liquid Crystals | volume = 108 | issue = 3–4 | pages = 349 | year = 1984 | pmid = | pmc = }}
6. ^{{cite web|url=http://www.biochem.ucl.ac.uk/bsm/dbbrowser/index/|title=Teresa K Attwood|website=biochem.ucl.ac.uk/bsm/dbbrowser}}
7. ^{{DBLP|name=Terri K. Attwood}}
8. ^{{Google Scholar id|name=Terri Attwood}}
9. ^{{Cite journal | last1 = Attwood | first1 = T. K. | authorlink1 = Terri Attwood| last2 = Coletta | first2 = A. | last3 = Muirhead | first3 = G. | last4 = Pavlopoulou | first4 = A. | last5 = Philippou | first5 = P. B. | last6 = Popov | first6 = I. | last7 = Romá-Mateo | first7 = C. | last8 = Theodosiou | first8 = A. | last9 = Mitchell | first9 = A. L. | title = The PRINTS database: A fine-grained protein sequence annotation and analysis resource--its status in 2012 | doi = 10.1093/database/bas019 | journal = Database | volume = 2012 | pages = bas019 | year = 2012 | pmid = 22508994| pmc =3326521 }}
10. ^{{Cite journal | last1 = Attwood | first1 = T. K. | authorlink1 = Terri Attwood| last2 = Croning | first2 = M. D. | last3 = Flower | first3 = D. R. | last4 = Lewis | first4 = A. P. | last5 = Mabey | first5 = J. E. | last6 = Scordis | first6 = P. | last7 = Selley | first7 = J. N. | last8 = Wright | first8 = W. | title = PRINTS-S: The database formerly known as PRINTS | doi = 10.1093/nar/28.1.225 | journal = Nucleic Acids Research | volume = 28 | issue = 1 | pages = 225–227 | year = 2000 | pmid = 10592232| pmc =102408 }}
11. ^{{Cite journal | last1 = Attwood | first1 = T. K. | authorlink1 = Terri Attwood| last2 = Bradley | first2 = P. | last3 = Flower | first3 = D. R. | last4 = Gaulton | first4 = A. | last5 = Maudling | first5 = N. | last6 = Mitchell | first6 = A. L. | last7 = Moulton | first7 = G. | last8 = Nordle | first8 = A. | last9 = Paine | first9 = K. | last10 = Taylor | first10 = P. | last11 = Uddin | first11 = A. | last12 = Zygouri | first12 = C. | title = PRINTS and its automatic supplement, prePRINTS | doi = 10.1093/nar/gkg030 | journal = Nucleic Acids Research | volume = 31 | issue = 1 | pages = 400–402 | year = 2003 | pmid = 12520033| pmc =165477 }}
12. ^{{Cite journal | last1 = Apweiler | first1 = R. | authorlink1 = Rolf Apweiler| last2 = Attwood | first2 = T. K. | authorlink2 = Terri Attwood| last3 = Bairoch | first3 = A. | authorlink3 = Amos Bairoch| last4 = Bateman | first4 = A. | authorlink4 = Alex Bateman| last5 = Birney | first5 = E. | authorlink5 = Ewan Birney| last6 = Biswas | first6 = M. | last7 = Bucher | first7 = P. | last8 = Cerutti | first8 = L. | last9 = Corpet | first9 = F. | last10 = Croning | first10 = M. D. | last11 = Durbin | first11 = R. | authorlink11 = Richard M. Durbin| last12 = Falquet | first12 = L. | last13 = Fleischmann | first13 = W. | last14 = Gouzy | first14 = J. | last15 = Hermjakob | first15 = H. | last16 = Hulo | first16 = N. | last17 = Jonassen | first17 = I. | last18 = Kahn | first18 = D. | last19 = Kanapin | first19 = A. | last20 = Karavidopoulou | first20 = Y. | last21 = Lopez | first21 = R. | last22 = Marx | first22 = B. | last23 = Mulder | first23 = N. J. | last24 = Oinn | first24 = T. M. | last25 = Pagni | first25 = M. | last26 = Servant | first26 = F. | last27 = Sigrist | first27 = C. J. | last28 = Zdobnov | first28 = E. M. | title = The InterPro database, an integrated documentation resource for protein families, domains and functional sites | doi = 10.1093/nar/29.1.37 | journal = Nucleic Acids Research | volume = 29 | issue = 1 | pages = 37–40 | year = 2001 | pmid = 11125043| pmc =29841 }}
13. ^{{Cite journal | last1 = Apweiler | first1 = R. | authorlink1 = Rolf Apweiler| last2 = Attwood | first2 = T. K.| authorlink2 = Terri Attwood | last3 = Bairoch | first3 = A. | authorlink3 = Amos Bairoch| last4 = Bateman | first4 = A. | authorlink4 = Alex Bateman| last5 = Birney | first5 = E. | authorlink5 = Ewan Birney| last6 = Biswas | first6 = M. | last7 = Bucher | first7 = P. | last8 = Cerutti | first8 = L. | last9 = Corpet | first9 = F. | last10 = Croning | doi = 10.1093/bioinformatics/16.12.1145 | first10 = M. D. R. | last11 = Durbin | first11 = R. | authorlink11 = Richard M. Durbin| last12 = Falquet | first12 = L. | last13 = Fleischmann | first13 = W. | last14 = Gouzy | first14 = J. | last15 = Hermjakob | first15 = H. | last16 = Hulo | first16 = N. | last17 = Jonassen | first17 = I. | last18 = Kahn | first18 = D. | last19 = Kanapin | first19 = A. | last20 = Karavidopoulou | first20 = Y. | last21 = Lopez | first21 = R. | last22 = Marx | first22 = B. | last23 = Mulder | first23 = N. J. | last24 = Oinn | first24 = T. M. | last25 = Pagni | first25 = M. | last26 = Servant | first26 = F. | last27 = Sigrist | first27 = C. J. A. | last28 = Zdobnov | first28 = E. M. | last29 = Interpro | first29 = C. | title = InterPro--an integrated documentation resource for protein families, domains and functional sites | journal = Bioinformatics | volume = 16 | issue = 12 | pages = 1145–1150 | year = 2000 | pmid = 11159333| pmc = }}
14. ^{{cite web|url=http://www.pharmadm.com/biomint/org/|title=BioMinT: Biological Text Mining EU FP5 Quality of Life Project|format=|website=|archiveurl=https://www.webcitation.org/69QISzhoR?url=http://www.pharmadm.com/biomint/org/|archivedate=2012-07-25|deadurl=yes|df=}}
15. ^{{cite web|url=http://www.bioinf.man.ac.uk/dbbrowser/ember/|title=EMBER - European Multimedia Bioinformatics Educational Resource|website=www.bioinf.man.ac.uk}}
16. ^{{cite web |url=http://gow.epsrc.ac.uk/NGBOViewGrant.aspx?GrantRef=GR/R80810/01 |title=Platform grant: PARADIGM - Platform for Annotation, Robust Analysis, Data Integration & Genome Management |format= |website= |accessdate=2012-07-25}}
17. ^{{cite web |url=http://www.seqahead.eu/ |title=COST Action: NGS-Data Analysis Network |format= |website= |accessdate=2012-07-25}}
18. ^{{cite web|url=http://allbio.ba.itb.cnr.it/|title=start – AllBio|format=|website=|archiveurl=https://www.webcitation.org/69QK07f1c?url=http://allbio.ba.itb.cnr.it/doku.php|archivedate=2012-07-25|deadurl=yes|df=}}
19. ^{{Cite journal | last1 = Pettifer | first1 = S. | last2 = Ison | first2 = J. | last3 = Kalas | first3 = M. | last4 = Thorne | first4 = D. | last5 = McDermott | first5 = P. | last6 = Jonassen | first6 = I. | last7 = Liaquat | first7 = A. | last8 = Fernández | first8 = J. M. | last9 = Rodriguez | first9 = J. M. | last10 = Partners | doi = 10.1093/nar/gkq297 | first10 = I. - | last11 = Pisano | first11 = D. G. | last12 = Blanchet | first12 = C. | last13 = Uludag | first13 = M. | last14 = Rice | first14 = P. | last15 = Bartaseviciute | first15 = E. | last16 = Rapacki | first16 = K. | last17 = Hekkelman | first17 = M. | last18 = Sand | first18 = O. | last19 = Stockinger | first19 = H. | last20 = Clegg | first20 = A. B. | last21 = Bongcam-Rudloff | first21 = E. | last22 = Salzemann | first22 = J. | last23 = Breton | first23 = V. | last24 = Attwood | first24 = T. K. | last25 = Cameron | first25 = G. | last26 = Vriend | first26 = G. | title = The EMBRACE web service collection | journal = Nucleic Acids Research | volume = 38 | issue = Web Server issue | pages = W683–W688 | year = 2010 | pmid = 20462862| pmc =2896104 }}
20. ^{{cite web |url=http://www.eurokup.org/ |title=European Kidney and Urine Proteomics | Eurokup |format= |website= |accessdate=2012-07-25}}
21. ^{{cite web |url=http://www.elixir-europe.org/ |title=Welcome to ELIXIR |format= |website= |accessdate=2012-07-26}}
22. ^{{cite web|title=Committees {{!}} GOBLET|url=http://www.mygoblet.org/committes_summarized|website=www.mygoblet.org|accessdate=24 August 2016}}
23. ^1 http://www.biocurator.org/elec/candidates2011/Attwood.pdf Attwood biography from biocurator.org
24. ^{{Cite journal | last1 = Burge | first1 = S. | last2 = Attwood | first2 = T. K. | authorlink2 = Terri Attwood| last3 = Bateman | first3 = A. | authorlink3 = Alex Bateman| last4 = Berardini | first4 = T. Z. | last5 = Cherry | first5 = M. | last6 = O'Donovan | first6 = C. | last7 = Xenarios | first7 = L. | last8 = Gaudet | first8 = P. | doi = 10.1093/database/bar059 | title = Biocurators and Biocuration: Surveying the 21st century challenges | journal = Database | volume = 2012 | pages = bar059 | year = 2012 | pmid = 22434828| pmc =3308150 }}
25. ^{{Cite journal | last1 = Lord | first1 = P. W. | last2 = Selley | first2 = J. N. | last3 = Attwood | first3 = T. K. | authorlink3 = Terri Attwood| doi = 10.1093/bioinformatics/18.10.1402 | title = CINEMA-MX: A modular multiple alignment editor | journal = Bioinformatics | volume = 18 | issue = 10 | pages = 1402–1403 | year = 2002 | pmid = 12376388| pmc = }}
26. ^{{Cite journal | last1 = Parry-Smith | first1 = D. J. | last2 = Payne | first2 = A. W. R. | last3 = Michie | first3 = A. D. | last4 = Attwood | first4 = T. K. | authorlink4 = Terri Attwood| title = CINEMA—a novel Colour INteractive Editor for Multiple Alignments | doi = 10.1016/S0378-1119(97)00650-1 | journal = Gene | volume = 221 | issue = 1 | pages = GC57–GC63 | year = 1998 | pmid = 9852962| pmc = }}
27. ^{{Cite journal | last1 = Attwood | first1 = T. K.| authorlink1 = Terri Attwood | last2 = Kell | first2 = D. B. | authorlink2 = Douglas Kell| last3 = McDermott | first3 = P. | last4 = Marsh | first4 = J. | last5 = Pettifer | first5 = S. R. | authorlink5 = Steve Pettifer| last6 = Thorne | first6 = D. | doi = 10.1093/bioinformatics/btq383 | title = Utopia documents: Linking scholarly literature with research data | journal = Bioinformatics | volume = 26 | issue = 18 | pages = i568–i574 | year = 2010 | pmid = 20823323 | pmc =2935404 }}
28. ^{{Cite journal | last1 = Pettifer | first1 = S. R. | authorlink1 = Steve Pettifer| last2 = Sinnott | first2 = J. R. | last3 = Attwood | first3 = T. K. | authorlink3 = Terri Attwood| doi = 10.1002/cfg.359 | title = UTOPIA—User-Friendly Tools for Operating Informatics Applications | journal = Comparative and Functional Genomics | volume = 5 | issue = 1 | pages = 56–60 | year = 2004 | pmid = 18629035| pmc =2447318 }}
29. ^{{Cite journal | last1 = Mitchell | first1 = A. L. | last2 = Reich | first2 = J. R. | last3 = Attwood | first3 = T. K. | authorlink3 = Terri Attwood| title = PRECIS: Protein reports engineered from concise information in SWISS-PROT | journal = Bioinformatics | volume = 19 | issue = 13 | pages = 1664–1671 | year = 2003 | pmid = 12967963 | doi=10.1093/bioinformatics/btg204}}
30. ^{{Cite journal | last1 = Mitchell | first1 = A. L. | last2 = Divoli | first2 = A. | last3 = Kim | first3 = J. -H. | last4 = Hilario | first4 = M. | last5 = Selimas | first5 = I. | last6 = Attwood | first6 = T. K. | authorlink6 = Terri Attwood| doi = 10.1093/bioinformatics/bti675 | title = METIS: Multiple extraction techniques for informative sentences | journal = Bioinformatics | volume = 21 | issue = 22 | pages = 4196–4197 | year = 2005 | pmid = 16159915 | pmc = }}
31. ^{{Cite journal | last1 = Divoli | first1 = A. | last2 = Attwood | first2 = T. K. | authorlink2 = Terri Attwood| doi = 10.1093/bioinformatics/bti296 | title = BioIE: Extracting informative sentences from the biomedical literature | journal = Bioinformatics | volume = 21 | issue = 9 | pages = 2138–2139 | year = 2005 | pmid = 15691860 | pmc = }}
32. ^{{Cite journal | last1 = Pettifer | first1 = S. | authorlink1 = Steve Pettifer| last2 = Thorne | first2 = D. | last3 = McDermott | first3 = P. | last4 = Marsh | first4 = J. | last5 = Villéger | first5 = A. | last6 = Kell | first6 = D. B. | authorlink6 = Douglas Kell| last7 = Attwood | first7 = T. K. | authorlink7 = Terri Attwood| title = Visualising biological data: A semantic approach to tool and database integration | doi = 10.1186/1471-2105-10-S6-S19 | journal = BMC Bioinformatics | volume = 10 | pages = S19 | year = 2009 | pmid = 19534744 | pmc =2697642 }}
33. ^{{Cite journal | last1 = Attwood | first1 = T. K. | authorlink1 = Terri Attwood| last2 = Kell | first2 = D. B. | authorlink2 = Douglas Kell| last3 = McDermott | first3 = P. | last4 = Marsh | first4 = J. | last5 = Pettifer | first5 = S. R. | authorlink5 = Steve Pettifer| last6 = Thorne | first6 = D. | doi = 10.1042/BJ20091474 | title = Calling International Rescue: Knowledge lost in literature and data landslide! | journal = Biochemical Journal | volume = 424 | issue = 3 | pages = 317–333 | year = 2009 | pmid = 19929850 | pmc =2805925 }}
34. ^{{cite web |url=http://gow.epsrc.ac.uk/NGBOViewPerson.aspx?PersonId=68284 |title=Grants awarded to Terri Attwood by the EPSRC |format= |accessdate=2012-07-25|author=Anon|website=epsrc.ac.uk|location=Swindon}}
35. ^1 Terri Attwood's {{ORCID|0000-0003-2409-4235}}
36. ^{{cite book |author1=Parry-Smith, David J. |author2=Attwood, Teresa K. |title=Introduction to bioinformatics |publisher=Longman |location=New York |year=1999 |pages= |isbn=978-0-582-32788-7 |oclc= |doi= |accessdate=}}
37. ^{{cite book |author1=Attwood, Teresa K. |author2=Higgs, Paul |title=Bioinformatics And Molecular Evolution |publisher=Blackwell Publishers |location=Cambridge, Massachusetts |year=2005 |pages= |isbn=978-1-4051-0683-2 |oclc= |doi= |accessdate=}}
38. ^{{cite book |last1=Attwood |first1=Teresa K. |last2=Pettifer |first2=Stephen Robert|last3=Thorne |first3=David |date=2016 |title=Bioinformatics Challenges at the Interface of Biology and Computer Science: Mind the Gap |url=https://www.research.manchester.ac.uk/portal/en/publications/bioinformatics-challenges-at-the-interface-of-biology-and-computer-science(dae1a9ed-53b8-45d7-b7fb-d3766162c3c7).html |location=Chichester, West Sussex ; Hoboken, New Jersey |publisher=Wiley-Blackwell |pages=424 |isbn=9780470035481 |oclc=951190363}}
39. ^{{cite web |url=http://www.biochemj.org/bj/bjedboard.htm |title=Biochemical Journal Editorial Board |website= |accessdate=2012-07-25 |deadurl=yes |archiveurl=https://web.archive.org/web/19990220114640/http://www.biochemj.org/bj/bjedboard.htm |archivedate=1999-02-20 |df= }}
40. ^{{cite web |url=http://www.oxfordjournals.org/our_journals/databa/editorial_board.html |title=Oxford Journals | Life Sciences | Database | Editorial board |website= |accessdate=2012-07-25}}
{{Authority control}}{{DEFAULTSORT:Attwood, Teresa K.}}

9 : Academics of the University of Manchester|Living people|British women scientists|Women computer scientists|Bioinformaticians|School of Computer Science, University of Manchester|20th-century women scientists|21st-century women scientists|1959 births
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