词条 | 'The All-Species Living Tree' Project |
释义 |
Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Tree{{See also|Bacterial phyla}}The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryotes not present in analysis). This 16S rRNA-based phylogenetic tree is based on the ARB-SILVA release LTPs 121 (June 2015)[4][5] and contains all type species with validly published names. {{clade|label1=Domain Archaea |1={{clade |1=Thaumarchaeota |2={{clade |1=Crenarchaeota (Thermoprotei) |label2=Euryarchaeota |2={{clade |1=Methanopyrus kandleri |2={{clade |1=Methanococcales |2={{clade |label1=Eurythermea |1={{clade |1=Thermococcaceae |2=Thermoplasmata |label2=Neobacteria |2={{clade |1=Methanobacteriales |2={{clade |1=Archaeoglobaceae |label2=Halomebacteria |2={{clade |1=Methanomicrobia |2=Halobacteriaceae }} }} }} }} }} }} }} }} |label2=Domain Bacteria |2={{clade |1=Thermotogales |2={{clade |1=Thermodesulfobiaceae (Firmicutes) |2={{clade |1=Synergistaceae {Clostridiales Family XV Incertae Sedis} (Firmicutes) |2={{clade |1=Caldisericum exile |2={{clade |1={{clade |1=Thermodesulfobacteriaceae |2=Aquificales |2={{clade |label1=Firmicutes |1={{clade |1=Thermaerobacter |2={{clade |1={{clade |1=Caldicellulosiruptor |2={{clade |1=Thermoanaerobacteraceae |2={{clade |1=Thermanaeromonas toyohensis |2={{clade |1=Dictyoglomus |2=Thermoanaerobacterales Unnamed clade I (incl. Fervidicola) }} }} }} }} |2={{clade |1=Thermoanaerobacterales Unnamed clade II |2={{clade |1={{clade |1=Gelria glutamica |2={{clade |1=Clostridiales Family XVIII Incertae Sedis |2=Sulfobacillus }} }} |2={{clade |1=Clostridia s.s. (incl. Thermolithobacter, Negativicutes & Thermoanaerobacterales Unnamed clade III) |2=Bacilli (incl. Erysipelotrichia & Mollicutes) }} }} }} }} }} |2={{clade |1={{clade |1=Actinobacteria |label2=Chloroflexi |2={{clade |1={{clade |1={{clade |1=Thermoflexus hugenholtzii |2=Dehalococcoidaceae |2={{clade |1=Caldilineaceae |2={{clade |1=Ardenticatena maritima |2=Anaerolineaceae }} }} }} |2={{clade |1=Ktedonobacteria |2={{clade |1=Thermomicrobia |2=Chloroflexi }} }} }} }} |2={{clade |1=Nitrospiraceae |2={{clade |1=Deinococci |2={{clade |1=Thermoanaerobaculum aquaticum |2={{clade |1={{clade |1={{clade |1={{clade |1=Caldithrix |2={{clade |1=Gemmatimonas aurantiaca |2=Fibrobacter }} }} |label2=Planctobacteria |2={{clade |label1=Planctomycetes |1={{clade |1=Phycisphaera mikrensis |2=Planctomycetales |2={{clade |1=Chlamydiales |2={{clade |label1=Lentisphaerae |1={{clade |1=Oligosphaera ethanolica |2=Lentisphaeria |label2=Verrucomicrobia |2={{clade |1=Opitutae |2=Verrucomicrobiales }} }} }} }} }} |label2=Sphingobacteria |2={{clade |label1=Chlorobi |1={{clade |1=Ignavibacteriaceae |2=Chlorobiaceae |2=Bacteroidetes }} }} |2={{clade |label1=Thiobacteria |1={{clade |1=Deltaproteobacteria |2={{clade |1=Deferrisoma carnini |2={{clade |1=Desulfovibrionales |2={{clade |1=Desulfurellaceae |2=Epsilonproteobacteria }} }} }} }} |2={{clade |1={{clade |label1=Acidobacteria |1={{clade |1=Holophagae |2={{clade |1=Bryobacter aggregatus |2=Acidobacteriaceae }} }} |2={{clade |1={{clade |1=Chrysiogenaceae |2=Deferribacteraceae |2={{clade |1=Spirochaetales |2={{clade |1=Fusobacteriales |2={{clade |1=Elusimicrobium minutum |2=Armatimonadetes }} }} }} }} }} |2={{clade |1=Mariprofundus ferrooxydans |label2=Rhodobacteria |2={{clade |1=Alphaproteobacteria |label2=Chromatibacteria |2={{clade |1=Gammaproteobacteria (paraphyletic) |2=Betaproteobacteria }} }} }} }} }} }} }} }} }} }} }} }} }} }} }} }} }} References1. ^{{Cite journal| last1 = Yarza | first1 = P.| last2 = Richter | first2 = M.| last3 = Peplies | first3 = J. R.| last4 = Euzeby | first4 = J.| last5 = Amann | first5 = R.| last6 = Schleifer | first6 = K. H.| last7 = Ludwig | first7 = W.| last8 = Glöckner | first8 = F. 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L. | last2 = Yarza | first2 = P. | last3 = Ludwig | first3 = W. | last4 = Euzéby | first4 = J. | last5 = Amann | first5 = R. | last6 = Schleifer | first6 = K. H. | last7 = Oliver Glöckner | first7 = F. | last8 = Rosselló-Móra | first8 = R. | doi = 10.1016/j.syapm.2011.03.001 | title = Release LTPs104 of the All-Species Living Tree | journal = Systematic and Applied Microbiology | volume = 34 | issue = 3 | pages = 169–170 | year = 2011 | pmid = 21497273| pmc = }} 4. ^{{Cite journal| title = ARB-SILVA release LTPs 121: overview| url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_121/LTPs121_SSU_tree_overview.pdf}} 5. ^{{Cite journal| title = ARB-SILVA release LTPs 121: full tree| url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_121/LTPs121_SSU_tree.pdf}} External links 5 : Bacteria|Bacteriology|Microbiology|Taxonomy (biology)|Systems of bacterial taxonomy |
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