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词条 C9orf50
释义

  1. Gene

  2. Transcript

  3. Protein

  4. Homologs

  5. References

{{Infobox_gene}}

Chromosome 9 open reading frame 8 is a protein that in humans is encoded by the C9orf50 gene.[1] This protein has a function that is not yet very well understood by the scientific community. C9orf50 has one other known alias, FLJ35803.[2] In humans the gene coding sequence is 10,051 base pairs long, transcribing an mRNA of 1,624 bases that encodes a 431 amino acid protein.

Gene

In humans the gene is located on the minus strand at 9q34.11 and the coding sequence is 8,552 base pairs long.[3] In the neighborhood of C9orf50 is NTMT1 gene.[4] This gene is made up of 7 exons. On human chromosome 9, the gene spans bases chr9:132,374,504-132,383,055[5]

Transcript

The C9orf50 gene has isoforms X1-X11.[5]

Protein

The C9orf50 protein has a molecular weight of 47,639 Da and consists 431 amino acids.[3] The C9orf50 protein contains the conserved domain in pfam15737- DUF4685, the function of which is not well understood and conserved in vertebrates.

Homologs

There are no known paralogs of C9orf50. Homologs of C9orf50 have been found conserved across all subclasses of mammals.[6] This gene is not found in reptiles, amphibians, birds, or any other organisms evolved before mammals. A list of mammals in which C9orf50 is conserved is shown below.

C9orf50 Orthologs
Common NameTaxonomic GroupDivergence from Humans (MYA)NCBI Accession #Protein Length (AA)Sequence Identity to Humans%
HumanHominini0NP_955382.3431100
ChimpanzeePrimates6.65XP_016817319.143197.22
GorillaPrimates9.06XP_018889539.143593.17
Deer MouseRodentia90XP_006983488.139146.14
Prairie VoleRodentia90XP_005346778.137045.18
American PikaLagomorpha90XP_004593748.157938.11
Narrow Ridged Finless PorpoiseCetacea96XP_024617982.147356.71
Killer WhaleCetacea96XP_012388229.134359.34
AlpacaArtiodactyla96XP_006205645.139953.83
Black Flying FoxChiroptera96XP_015449607.143253.21
Egyption Fruit batChiroptera96XP_015989428.143153.01
GoatArtiodactyla96XP_017910228.143852.4
Northern Fur SealCarnivora96XP_025744313.144152.36
Grizzly BearCarnivora96XP_026369526.144750.63
European HedgehogSoricomorpha96XP_007527129.141951.42
Star Nosed MoleProboscidea96XP_012576659.138348.68
Southern White RhinocerosPerissodactyla96XP_014637447.148947.25
African Bush ElephantProboscidea105XP_023401069.152749.31
Nine-Banded ArmadilloCingulata105XP_023443586.147646.72
Gray short tailed opossumDidelpimorphia159XP_007475193.158332.56

References

1. ^{{Cite web|url=https://www.ncbi.nlm.nih.gov/protein/NP_955382.3|title=uncharacterized protein C9orf50 [Homo sapiens] - Protein - NCBI|website=www.ncbi.nlm.nih.gov|access-date=2019-02-25}}
2. ^{{Cite web|url=https://uswest.ensembl.org/Homo_sapiens/Gene/Summary?g=ENSG00000179058;r=9:129612225-129620776|title=Gene: C9orf50 (ENSG00000179058) - Summary - Homo sapiens - Ensembl genome browser 95|website=uswest.ensembl.org|access-date=2019-02-25}}
3. ^{{Cite web|url=https://www.genecards.org/cgi-bin/carddisp.pl?gene=C9orf50&keywords=c9orf50|title=C9orf50 Gene|last=|first=|date=|website=www.genecards.org|archive-url=|archive-date=|dead-url=|access-date=2019-02-25}}
4. ^{{Cite web|url=https://genecards.weizmann.ac.il/geneloc-bin/display_map.pl?chr_nr=9&range_type=gc_id&gc_id=GC09M129612#GC09M129612|title=GeneLoc map region for Chromosome 9 (127,612,225 - 131,622,275 bp) around "C9orf50"|last=|first=|date=|website=GeneLoc|archive-url=|archive-date=|dead-url=|access-date=}}
5. ^{{Cite web|url=https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&list_uids=375759|title=C9orf50 chromosome 9 open reading frame 50 [Homo sapiens (human)] - Gene - NCBI|website=www.ncbi.nlm.nih.gov|access-date=2019-02-25}}
6. ^{{Cite web|url=https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins&PROGRAM=blastp&BLAST_PROGRAMS=blastp&LINK_LOC=protein&PAGE_TYPE=BlastSearch&QUERY=|title=Protein BLAST: search protein databases using a protein query|website=blast.ncbi.nlm.nih.gov|access-date=2019-02-25}}
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