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词条 DUF3268 RNA motif
释义

  1. References

{{Infobox rfam
| Name = DUF3268
| image = RF02966.svg
| width =
| caption = Consensus secondary structure and sequence conservation of DUF3268 RNA
| Symbol = DUF3268
| AltSymbols =
| Rfam = RF02966
| miRBase =
| miRBase_family =
| RNA_type = Gene; sRNA
| Tax_domain =
| GO =
| SO = {{SO|0001263}}
| CAS_number =
| EntrezGene =
| HGNCid =
| OMIM =
| RefSeq =
| Chromosome =
| Arm =
| Band =
| LocusSupplementaryData =
}}

The DUF3268 RNA motif is a conserved RNA structure that was discovered by bioinformatics.[1]

DUF3268 motifs are found in Firmicutes AND Clostridia).

DUF3268 RNAs are consistently found in the 3' untranslated regions (UTRs) of operons that include genes which encode the conserved protein domain DUF3268, sigma factors and signal peptidases. This genetic location could suggest that DUF3268 are cis-regulatory elements. However, it is unusually for cis regulators to be present in 3' UTRs in bacteria. Therefore it is also possible that DUF3268 RNAs function as small RNAs.

Predicted Rho-independent transcription terminators are often located nearby to (10-40) and downstream of DUF3268 RNAs. These transcription terminators are consistent with both the hypothesis of cis-regulatory function and function as a small RNA.

References

1. ^{{cite journal |vauthors=Weinberg Z, Lünse CE, Corbino KA, Ames TD, Nelson JW, Roth A, Perkins KR, Sherlock ME, Breaker RR |title=Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions |journal=Nucleic Acids Res. |volume=45 |issue=18 |pages=10811-10823 |date=October 2017 |pmid=28977401 |pmc=5737381 |doi=10.1093/nar/gkx699 |url=}}

1 : Non-coding RNA

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