Ebejer is a surname. Notable people with the surname include:

• Francis Ebejer (1925–1993), Maltese dramatist and novelist
• Walter Michael Ebejer (born 1929), Maltese missionary, lecturer and a retired bishop of the catholic church

• Edsel Dope, birth name Brian Charles Ebejer (born 1974), lead singer and main songwriter for nu metal/industrial metal band Dope

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