Carl Fogarty won the riders' championship, his fourth, and Ducati won the manufacturers' championship.
| Round | Country | Circuit | Date | Superpole | Fastest lap | Winning rider | Winning team | Report |
|---|
| 1 | R1 | {{flagicon|ZAF}} South Africa | Kyalami Grand Prix Circuit | 28 March | {{flagicon|AUS}} Troy Corser | USA}} Colin Edwards | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance |
|---|
| 2 | R1 | {{flagicon|AUS}} Australia | Phillip Island Grand Prix Circuit | 18 April | {{flagicon|AUS}} Troy Corser | GBR}} Carl Fogarty | AUS}} Troy Corser | Ducati Performance | Report |
|---|
| R2 | AUS}} Troy Corser | AUS}} Troy Corser | Ducati Performance |
|---|
| 3 | R1 | {{flagicon|GBR}} Great Britain | Donington Park | 2 May | {{flagicon|ITA}} Pierfrancesco Chili | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | USA}} Colin Edwards | USA}} Colin Edwards | Castrol Honda |
|---|
| 4 | R1 | {{flagicon|ESP}} Spain | Circuito de Albacete | 16 May | {{flagicon|GBR}} Carl Fogarty | JPN}} Akira Yanagawa | JPN}} Noriyuki Haga | Yamaha WSBK Team | Report |
|---|
| R2 | USA}} Colin Edwards | USA}} Colin Edwards | Castrol Honda |
|---|
| 5 | R1 | {{flagicon|ITA}} Italy | Autodromo Nazionale Monza | 30 May | {{flagicon|USA}} Colin Edwards | AUS}} Troy Corser | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | ITA}} Pierfrancesco Chili | GBR}} Carl Fogarty | Ducati Performance |
|---|
| 6 | R1 | {{flagicon|DEU}} Germany | Nürburgring | 13 June | {{flagicon|GBR}} Carl Fogarty | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | AUS}} Troy Corser | AUS}} Troy Corser | Ducati Performance |
|---|
| 7 | R1 | {{flagicon|SMR}} San Marino | Misano World Circuit | 27 June | {{flagicon|GBR}} Carl Fogarty | NZL}} Aaron Slight | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | AUS}} Troy Corser | GBR}} Carl Fogarty | Ducati Performance |
|---|
| 8 | R1 | {{flagicon|USA}} United States | Laguna Seca Raceway | 11 July | {{flagicon|AUS}} Troy Corser | AUS}} Anthony Gobert | AUS}} Anthony Gobert | Vance & Hines Ducati | Report |
|---|
| R2 | AUS}} Troy Corser | USA}} Ben Bostrom | Vance & Hines Ducati |
|---|
| 9 | R1 | {{flagicon|EUR}} Europe | Brands Hatch | 1 August | {{flagicon|GBR}} Carl Fogarty | AUS}} Troy Corser | USA}} Colin Edwards | Castrol Honda | Report |
|---|
| R2 | NZL}} Aaron Slight | USA}} Colin Edwards | Castrol Honda |
|---|
| 10 | R1 | {{flagicon|AUT}} Austria | A1-Ring | 29 August | {{flagicon|USA}} Colin Edwards | ITA}} Pierfrancesco Chili | USA}} Colin Edwards | Castrol Honda | Report |
|---|
| R2 | ITA}} Pierfrancesco Chili | ITA}} Pierfrancesco Chili | Alstare Suzuki |
|---|
| 11 | R1 | {{flagicon|NLD}} Netherlands | TT Circuit Assen | 5 September | {{flagicon|AUS}} Troy Corser | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance |
|---|
| 12 | R1 | {{flagicon|DEU}} Germany | Hockenheimring | 12 September | {{flagicon|NZL}} Aaron Slight | GBR}} Carl Fogarty | GBR}} Carl Fogarty | Ducati Performance | Report |
|---|
| R2 | JPN}} Akira Yanagawa | ITA}} Pierfrancesco Chili | Alstare Suzuki |
|---|
| 13 | R1 | {{flagicon|JPN}} Japan | Sugo | 10 October | {{flagicon|AUS}} Troy Corser | JPN}} Akira Ryo | JPN}} Akira Ryo | Suzuki | Report |
|---|
| R2 | JPN}} Akira Ryo | JPN}} Akira Yanagawa | Kawasaki Racing Team |
|---|
|
1. ^{{cite web|url=http://sbk.perugiatiming.com/pdf_results/pdf_frame.asp?p_Round=ROUND&p_Anno=1999&p_Manifestazione=13&p_Gara=01&p_Sessione=002&p_Stampa=STD|title=Championship standings|work=sbk.perugiatiming.com|publisher=Perugia Timing|date=10 October 1999|accessdate=20 December 2014|archiveurl=https://web.archive.org/web/20140410200609/http://sbk.perugiatiming.com/pdf_results/pdf_frame.asp?p_Round=ROUND&p_Anno=1999&p_Manifestazione=13&p_Gara=01&p_Sessione=002&p_Stampa=STD|archivedate=10 April 2014}}
2. ^{{cite web|url=http://sbk.perugiatiming.com/pdf_results/pdf_frame.asp?p_Round=ROUND&p_Anno=1999&p_Manifestazione=13&p_Gara=01&p_Sessione=002&p_Stampa=MAK|title=Manufacturer standings|work=sbk.perugiatiming.com|publisher=Perugia Timing|date=10 October 1999|accessdate=20 December 2014|archiveurl=https://web.archive.org/web/20140410200614/http://sbk.perugiatiming.com/pdf_results/pdf_frame.asp?p_Round=ROUND&p_Anno=1999&p_Manifestazione=13&p_Gara=01&p_Sessione=002&p_Stampa=MAK|archivedate=10 April 2014}}
{{Superbike World Championship}}{{DEFAULTSORT:1999 Superbike World Championship}}