“AMAP”的意思、由来-开放百科全书

词条

AMAP

释义

Input/Output
References
External links

{{Infobox Software|name=AMAP|developer=Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)|latest_release_version=2.0|operating_system=UNIX, Linux, Mac|genre=Bioinformatics tool|licence=Open source|website=AMAP download}}

AMAP is a multiple sequence alignment program based on sequence annealing.^[1] This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.

The program can be used through the AMAP web server or as a standalone program which can be installed with the source code.

Input/Output

This program accepts sequences in FASTA format.

The output format includes: FASTA format, Clustal.

References

1. ^{{cite journal |last1=S. Schwartz |first1=A. |last2=Pachter |first2=L. |title=Multiple alignment by sequence annealing |journal=Bioinformatics |date=19 January 2007 |volume=23 |issue=2 |pages=e24–e29 |doi=10.1093/bioinformatics/btl311 }}

External links

[https://web.archive.org/web/20061011195311/http://baboon.math.berkeley.edu/mavid/ AMAP web server]

1 : Bioinformatics software

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