Werner Weber may refer to:

• Werner Weber (canoeist) (b. 1939), Swiss athlete in the 1960 Olympics
• Werner Weber (mathematician) (1906–1975), German student of Emmy Noether, wartime cryptographer, and Nazi
• Werner Weber (artist), mural painter of Deutz Abbey, near Cologne in Germany
• Werner Weber (cyclist) (1942–2001), Swiss winner of the 1963 Stausee-Rundfahrt Klingnau
• Werner Weber (journalist) (1919–2005), Swiss journalist and literary scholar, 1967 winner of the Johann-Heinrich-Merck-Preis
• Werner Weber (Kriegsmarine) (died 1944), commander of German submarine U-845
• Werner Weber (politician), mayor of Naurath (Wald), a municipality in Germany

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