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词条 Desulfurococcaceae
释义

  1. Phylogeny

  2. References

  3. Further reading

     Scientific journals  Scientific books  Scientific databases 

  4. External links

{{Taxobox
| domain = Archaea
| regnum = Crenarchaeota
| phylum = Crenarchaeota
| classis = Thermoprotei
| ordo = Desulfurococcales
| familia = Desulfurococcaceae
| familia_authority = Zillig & Stetter, 1983 emend. Burggraf et al. 1997
| subdivision_ranks = Genera
| subdivision =
  • Aeropyrum Sako et al. 1996
  • Desulfurococcus Zillig and Stetter 1983 emend. Perevalova et al. 2005
  • Ignicoccus Huber et al. 2000
  • Ignisphaera Niederberger et al. 2006
  • Staphylothermus Stetter and Fiala 1986
  • Stetteria Jochimsen et al. 1998
  • Sulfophobococcus Hensel et al. 1997
  • Thermodiscus Stetter 2003
  • ThermogladiusOsburn & Amend 2011
  • Thermosphaera Huber et al. 1998

}}

In taxonomy, the Desulfurococcaceae are a family of the disc-shaped anaerobic microorganisms belonging to the order Desulfurococcales, in the domain Archaea.[1] Members of this family are distinguished from the other family (Pyrodictiaceae) in the order Desulfurococcales by having an optimal growth temperature below 100 °C, rather than above 100 °C, and by being more diverse.[2] Several genera of the family have been identified (see taxobox).

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[3] and National Center for Biotechnology Information (NCBI)[4]

and the phylogeny is based on 16S rRNA-based LTP release 121 by 'The All-Species Living Tree' Project.[5] According to the study done by 'The All-Species Living Tree' Project Desulfurococcaceae is a paraphyletic and polyphyletic clade with member genera distributed among three clades throughout the base of the class Thermoprotei.

  • Ignisphaera aggregans Niederberger et al. 2006
  • Thermogladius shockiiOsburn & Amend 2011
  • Desulfurococcaceae clade 1
{{clade
|1={{clade
|label1=Ignicoccus
|1={{clade
|1=I. hospitalis Paper et al. 2007
|2={{clade
|1=I. islandicus Huber et al. 2000 (type sp.)
|2=I. pacificus Huber and Stetter 2000
       }}     }}

|2={{clade
|label1=Staphylothermus
|1={{clade
|1=S. hellenicus Arab et al. 2000
|2=S. marinus Stetter and Fiala 1986 (type sp.)
|2={{clade
|1=Sulfophobococcus zilligii Hensel et al. 1997
|2={{clade
|1=Thermosphaera aggregans Huber et al. 1998
|label2=Desulfurococcus
|2={{clade
|1=?D. amylolyticus Bonch-Osmolovskaya et al. 2001
|2=?D. mobilisZillig and Stetter 1983
|3=?D. saccharovoransStetter 1986
|4=D. mucosus Zillig and Stetter 1983 (type sp.)
|5={{clade
|1=D. fermentans Perevalova et al. 2005
|2=D. kamchatkensis Kublanov et al. 2009
             }}           }}         }}       }}     }}   }} }}
  • Desulfurococcaceae clade 2
{{clade
|1={{clade
|1=Stetteria hydrogenophila Jochimsen et al. 1998
|2={{clade
|1=Thermodiscus maritimus Stetter 2003
|label2=  Aeropyrum
|2={{clade
|1=Aeropyrum camini Nakagawa et al. 2004
|2=Aeropyrum pernix Sako et al. 1996 (type sp.)
       }}     }}   }}

}}

Notes:

♦ Type strain lost or not available

♠ Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LPSN)

References

1. ^See the NCBI [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=2272 webpage on Desulfurococcaceae]. Data extracted from the {{cite web | url=ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=National Center for Biotechnology Information | accessdate=2007-03-19}}
2. ^{{cite journal|last = Itoh|first = T.|author2 = K. Suzuki|author3 = P. C. Sanchez|author4 = T. Nakasel|title = Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines|journal = International Journal of Systematic and Evolutionary Microbiology|volume = 53|pages = 1149–1154|year = 2003|url = http://ijs.sgmjournals.org/cgi/reprint/53/4/1149?ck=nck|doi = 10.1099/ijs.0.02580-0|pmid = 12892143|issue = Pt 4|deadurl = yes|archiveurl = https://web.archive.org/web/20070929120508/http://ijs.sgmjournals.org/cgi/reprint/53/4/1149?ck=nck|archivedate = 2007-09-29|df = }}
3. ^{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Crenarchaeota | title=Desulfurococcaceae | accessdate=2013-08-07 | publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN)   | deadurl=yes | archiveurl=https://web.archive.org/web/20130127030659/http://www.bacterio.cict.fr/classifphyla.html#Crenarchaeota | archivedate=2013-01-27 | df= }}
4. ^{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=2272&lvl=3&lin |title=Desulfurococcaceae |accessdate=2013-08-07 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database [https://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/index.cgi]}}
5. ^All-Species Living Tree Project.{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_121/LTPs121_SSU_tree.pdf | title=16S rRNA-based LTP release 121 (full tree) | publisher=Silva Comprehensive Ribosomal RNA Database   | accessdate=2015-08-07}}

Further reading

Scientific journals

  • {{cite journal | doi = 10.1099/00207713-47-3-657 | vauthors = Burggraf S, Huber H, Stetter KO | year = 1997 | title = Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data | journal = Int. J. Syst. Bacteriol. | volume = 47 | pages = 657–660 | pmid = 9226896 | issue = 3}}
  • {{cite journal|last1=Comolli|first1=Luis R.|last2=Banfield|first2=Jill F.|title=Inter-Species interconnections in acid mine drainage microbial communities|journal=Frontiers in Microbiology|date=25 July 2014|volume=5|pages=Article 367|doi=10.3389/fmicb.2014.00367|pmid=25120533|pmc=4110969|url=http://www.frontierdin.org/microbiology/|accessdate=13 November 2014}}{{dead link|date=January 2018 |bot=InternetArchiveBot |fix-attempted=yes }}
  • {{cite journal | vauthors = Zillig W, Stetter KO, Prangishvilli D, Schafer W, Wunderl S, Janekovic D, Holz I, Palm P | year = 1982 | title = Desulfurococcaceae, the second family of the extremely thermophilic, anaerobic, sulfur-respiring Thermoproteales | journal = Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. 1 Orig. | volume = C3 | pages = 304–317}}

Scientific books

  • {{cite book | vauthors = Huber H, Stetter KO | year = 2001 | chapter = Order II. Desulfurococcales ord. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | pages = 169 | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 }}

Scientific databases

{{Taxonomic references|taxon=Desulfurococcaceae}}

External links

{{Taxonomic links|microbe=yes|NCBI_taxID=2272|taxoname=Desulfurococcaceae|LSPN_letter=d|LSPN_taxoname=desulfurococcaceae}}{{Taxonbar|from=Q5265456}}{{Crenarchaeota-stub}}

2 : Archaea taxonomic families|Crenarchaeota

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