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词条 ETBLAST
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  1. See also

  2. External resources

  3. References

  4. External links

{{DISPLAYTITLE:eTBLAST}}{{COI|date=August 2011}}

eTBLAST is a now-defunct free text similarity service search engine which offered access to the MEDLINE database, the National Institutes of Health (NIH) CRISP database, the Institute of Physics (IOP) database, Wikipedia, arXiv, the NASA technical reports database, Virginia Tech class descriptions and a variety of databases of clinical interest. eTBLAST searched citation databases[1][2] and databases containing full text,[3] such as PUBMED. The eTBLAST server compared a user's natural text query to target databases using a hybrid search algorithm consisting of a low-sensitivity weighted keyword-based first pass followed by a novel sentence-alignment based second pass. eTBLAST was a web-based service of The Innovation Laboratory at the Virginia Bioinformatics Institute.

eTBLAST, as a text similarity engine, made possible a large study of duplicate publications and potential plagiarisms in the biomedical literature. Thousands of random samples of Medline abstracts were submitted to eTBLAST, and those with the highest similarity were studied and entered into an on-line database. This work revealed several trends, including an increasing rate of duplication in the biomedical literature, as reported in the journals Bioinformatics,[4][5] Anaesthesia and Intensive Care,[6] Clinical Chemistry,[7] Urologic Oncology,[8] Nature,[9] and Science.[10]

The system is now called HelioBLAST and is offered — still free of charge — by Harold "Skip" Garner through his company HelioText. {{citation needed span|It is continuously expanding with additional text-based databases.|date=February 2019}}

See also

  • BLAST (Basic Local Alignment Search Tool)
  • Natural language processing
  • Medical literature retrieval

External resources

  • [https://helioblast.heliotext.com/ Official website for HelioBlast]

References

1. ^{{cite journal |doi=10.1093/bioinformatics/btl388 |title=Text similarity: An alternative way to search MEDLINE |year=2006 |last1=Lewis |first1=J |last2=Ossowski |first2=S |last3=Hicks |first3=J |last4=Errami |first4=M |last5=Garner |first5=HR |journal=Bioinformatics |volume=22 |issue=18 |pages=2298–304 |pmid=16926219 }}
2. ^{{cite journal |doi=10.1109/MEMB.2004.1378640 |title=Text comparison based on dynamic programming |year=2004 |last1=Pertsemlidis |first1=A |last2=Garner |first2=HR |journal=IEEE Engineering in Medicine and Biology Magazine |volume=23 |issue=6 |pages=66–71 |pmid=15688594 }}
3. ^{{cite journal |doi=10.1371/journal.pone.0012704 |title=Systematic Characterizations of Text Similarity in Full Text Biomedical Publications |year=2010 |editor1-last=Curioso |editor1-first=Walter H |last1=Sun |first1=Z |last2=Errami |first2=M |last3=Long |first3=T |last4=Renard |first4=C |last5=Choradia |first5=N |last6=Garner |first6=H |journal=PLoS ONE |volume=5 |issue=9 |pages=e12704 |pmid=20856807 |pmc=2939881 |bibcode=2010PLoSO...512704S }}
4. ^{{cite journal |doi=10.1093/bioinformatics/btm574 |title=Deja vu a study of duplicate citations in Medline |year=2007 |last1=Errami |first1=M |last2=Hicks |first2=JM |last3=Fisher |first3=W |last4=Trusty |first4=D |last5=Wren |first5=JD |last6=Long |first6=TC |last7=Garner |first7=HR |journal=Bioinformatics |volume=24 |issue=2 |pages=243–9 |pmid=18056062 }}
5. ^{{cite journal |doi=10.1093/bioinformatics/btq146 |title=Identifying duplicate content using statistically improbable phrases |year=2010 |last1=Errami |first1=M |last2=Sun |first2=Z |last3=George |first3=AC |last4=Long |first4=TC |last5=Skinner |first5=MA |last6=Wren |first6=JD |last7=Garner |first7=HR |journal=Bioinformatics |volume=26 |issue=11 |pages=1453–7 |pmid=20472545 |pmc=2872002 }}
6. ^{{cite journal |pmid=18853580 |year=2008 |last1=Loadsman |first1=JA |last2=Garner |first2=HR |last3=Drummond |first3=GB |title=Towards the elimination of duplication in Anaesthesia and Intensive Care |volume=36 |issue=5 |pages=643–5 |journal=Anaesthesia and Intensive Care |url=http://www.aaic.net.au/document/?D=20080552 |doi=10.1177/0310057X0803600502 }}
7. ^{{cite journal |doi=10.1373/clinchem.2009.130468 |title=Quaere Verum |year=2010 |last1=George |first1=AC |last2=Long |first2=TC |last3=Garner |first3=HR |journal=Clinical Chemistry |volume=56 |issue=4 |pages=673–4 |pmid=20093558 }}
8. ^{{cite journal |doi=10.1016/j.urolonc.2010.09.016 |title=Combating unethical publications with plagiarism detection services |year=2011 |last1=Garner |first1=HR |journal=Urologic Oncology |volume=29 |issue=1 |pages=95–9 |pmid= 21194644 |pmc=3035174}}
9. ^{{cite journal |doi=10.1038/451397a |title=A tale of two citations |year=2008 |last1=Errami |first1=M |last2=Garner |first2=H |journal=Nature |volume=451 |issue=7177 |pages=397–9 |pmid=18216832 |bibcode=2008Natur.451..397E }}
10. ^{{cite journal |doi=10.1126/science.1167408 |title=Responding to Possible Plagiarism |year=2009 |last1=Long |first1=TC |last2=Errami |first2=M |last3=George |first3=AC |last4=Sun |first4=Z |last5=Garner |first5=HR |journal=Science |volume=323 |issue=5919 |pages=1293–4 |pmid=19265004 }}

External links

  • eTBLAST
{{Virginia Tech}}{{DEFAULTSORT:Etblast}}

7 : Virginia Tech|Bioinformatics software|National Institutes of Health|Medical search engines|Natural language processing|Bibliographic databases and indexes|Plagiarism detectors

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