Holy Spirit School may refer to:

• Holy Spirit School of Tagbilaran in Tagbilaran City, Bohol, Philippines
• Holy Spirit Elementary School (Kentucky) in Louisville, Kentucky, United States
• Holy Spirit High School (New Jersey) in Absecon, New Jersey, United States
• Holy Spirit High School (Newfoundland) in Conception Bay South, Newfoundland and Labrador, Canada
• Holy Spirit Preparatory School in Atlanta, Georgia, United States
• Holy Spirit Catholic Regional School in Tuscaloosa, Alabama, United States
• Holy Spirit Catholic School (San Jose, California)

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