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词条 Jmol
释义

  1. Screenshots

  2. See also

  3. References

  4. External links

{{short description|Jmol is an open-source Java viewer for chemical structures in 3D}}{{For|the legal procedure|judgment as a matter of law}}{{Infobox software
| name = Jmol
| logo = J(S)mol logo 2013.svg
| screenshot = Jmol screenshot streptavidin.png
| caption = Jmol three-dimensional structure rendering of streptavidin
| developer = Jmol development team
| released = {{Start date and age|2001}}
| status = Active
| programming language = Java
| operating system = Cross-platform
| platform = Systems with Java and Web browsers without Java
| size=
| language = Catalan, Chinese, Czech, Danish, Dutch, English, French, German, Hungarian, Indonesian, Italian, Korean, Portuguese, Spanish, Turkish, Ukrainian[1]
| language count = 16
| genre = Molecular modelling
| license = LGPL 2.0
| alexa =
| website = {{URL|www.jmol.org}}
| repo = {{URL|sourceforge.net/projects/jmol}}
| standard =
| AsOf =
}}

Jmol is computer software for molecular modelling chemical structures in 3-dimensions.[2] Jmol returns a 3D representation of a molecule that may be used as a teaching tool,[3] or for research e.g., in chemistry and biochemistry.

It is written in the programming language Java, so it can run on the operating systems Windows, macOS, Linux, and Unix, if Java is installed. It is free and open-source software released under a GNU Lesser General Public License (LGPL) version 2.0. A standalone application and a software development kit (SDK) exist that can be integrated into other Java applications, such as Bioclipse and Taverna.

A popular feature is an applet that can be integrated into web pages to display molecules in a variety of ways.

For example, molecules can be displayed as ball-and-stick models, space-filling models, ribbon diagrams, etc.[4]

Jmol supports a wide range of chemical file formats, including Protein Data Bank (pdb), Crystallographic Information File (cif), MDL Molfile (mol), and Chemical Markup Language (CML). There is also a JavaScript-only (HTML5) version, JSmol, that can be used on computers with no Java.[5]

The Jmol applet, among other abilities, offers an alternative to the Chime plug-in,[3] which is no longer under active development. While Jmol has many features that Chime lacks, it does not claim to reproduce all Chime functions, most notably, the Sculpt mode. Chime requires plug-in installation and Internet Explorer 6.0 or Firefox 2.0 on Microsoft Windows, or Netscape Communicator 4.8 on Mac OS 9. Jmol requires Java installation and operates on a wide variety of platforms. For example, Jmol is fully functional in Mozilla Firefox, Internet Explorer, Opera, Google Chrome, and Safari.

{{clear}}

Screenshots

See also

{{Portal|Free and open-source software}}
  • Chemistry Development Kit (CDK)
  • Comparison of software for molecular mechanics modeling
  • Jmol extension for MediaWiki
  • List of molecular graphics systems
  • Molecular graphics
  • Molecule editor
  • Proteopedia
  • PyMOL
  • SAMSON

References

1. ^[https://translations.launchpad.net/jmol Jmol translations]
2. ^{{citation |last= Chen |first= Jim X. |year= 2008 |title= Guide to Graphics Software Tools |isbn= 978-1-84800-900-4 |editor= Springer |page= 471 |url= https://books.google.com/books?id=Rv2gncprg3gC&pg=PA471&dq=jmol+is+3d#v=onepage&q=jmol%20is%203d&f=false}}
3. ^{{citation |last= Herráez |first= A |year= 2006 |title= Biomolecules in the Computer: Jmol to the Rescue |journal= Biochemistry and Molecular Biology Education |volume= 34 |issue= 4 |page= 7 |doi= 10.1002/bmb.2006.494034042644 |url= http://eric.ed.gov/ERICWebPortal/recordDetail?accno=EJ759053}}
4. ^{{citation |last= Herráez |first= A |year= 2007 |title= How to Use Jmol to Study and Present Molecular Structures, Volume 1 |isbn= 978-1-84799-259-8 |editor= Lulu |page= 21 |url= https://books.google.com/books?id=59kQFyfbsJMC&pg=PA21&dq=jmol+applet+web#v=onepage&q=jmol%20applet%20web&f=false}}
5. ^{{cite web |url= http://wiki.jmol.org/index.php/JSmol |title= JSmol |accessdate= 2015-11-02}}

External links

{{Commons category|Jmol}}
  • {{Official website|www.jmol.org}}
  • Wiki with listings of websites, wikis, and moodles
  • {{cite web |url= http://precedings.nature.com/documents/50/version/1 |title= Fast and Scriptable Molecular Graphics in Web Browsers without Java3D |first1= Egon |last1= Willighagen |first2= Miguel |last2= Howard |date= June 2007 |doi= 10.1038/npre.2007.50.1}}
{{Chemistry software}}

5 : Bioinformatics software|Chemistry software for Linux|Free chemistry software|Free software programmed in Java (programming language)|Molecular modelling software

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