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词条 Thermoplasmata
释义

  1. Phylogeny

  2. References

  3. Further reading

     Scientific journals  Scientific books  Scientific databases 

  4. External links

{{Taxobox
| domain = Archaea
| regnum = Euryarchaeota
| phylum = Euryarchaeota
| classis = Thermoplasmata Reysenbach 2002
| subdivision_ranks = Order
| subdivision =
  • Methanomassiliicoccales Iino et al. 2013
    • Methanomassiliicoccaceae Iino et al. 2013
  • Thermoplasmatales Reysenbach 2002
    • Thermogymnomonas Itoh et al. 2007
    • Ferroplasmaceae Golyshina et al. 2000
    • Picrophilaceae Schleper et al. 1996
    • Thermoplasmataceae Reysenbach 2002

}}

In taxonomy, the Thermoplasmata are a class of the Euryarchaeota.[1]

All are acidophiles, growing optimally at pH below 2. Picrophilus is currently the most acidophilic of all known organisms growing at a minimum pH of 0.06. Many of these organisms do not contain a cell wall, although this is not true in the case of Picrophilus. Most members of Thermotoplasmata are thermophilic.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[2] and National Center for Biotechnology Information (NCBI)[3]

and the phylogeny is based on 16S rRNA-based LTP release 121 by 'The All-Species Living Tree' Project.[4]

{{Clade | style=font-size:100%;line-height:80%
|label1=Methanomassiliicoccales
|1={{clade
|1=Candidatus Methanogranum caenicola Iino et al. 2013
|2=Candidatus Methanomethylophilus alvus Borrel et al. 2012
|3=Candidatus Methanoplasma termitum Lang et al. 2015
|label4=Methanomassiliicoccus
|4={{clade
|1=Ca. M. intestinalis Borrel et al. 2013
|2=M. luminyensis Dridi et al. 2012
     }}   }}

|label2=Thermoplasmatales
|2={{clade
|1={{clade
|1=Thermogymnomonas acidicola Itoh et al. 2007
|2={{clade
|label1= Thermoplasma
|1={{clade
|1=T. acidophilum Darland et al. 1970 (type sp.)
|2=T. volcanium Segerer et al. 1988
|2={{clade
|label1= Picrophilus
|1={{clade
|1=P. oshimae Schleper et al. 1996 (type sp.)
|2=P. torridus Zillig et al. 1996
|label2= Ferroplasmaceae
|2={{clade
|label1= Acidiplasma
|1={{clade
|1=A. aeolicum Golyshina et al. 2009 (type sp.)
|2=A. cupricumulans (Hawkes et al. 2008) Golyshina et al. 2009
|label2= Ferroplasma
|2={{clade
|1=?F. acidarmanusDopson et al. 2004
|2=?F. thermophilumZhou et al. 2008
|3=F. acidiphilum Golyshina et al. 2000 (type sp.)
             }}           }}         }}       }}     }}   }}

}}

Notes:

♠ Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature LPSN

References

1. ^See the NCBI [https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=183967 webpage on Thermoplasmata]. Data extracted from the {{cite web | url=ftp://ftp.ncbi.nih.gov/pub/taxonomy/ | title=NCBI taxonomy resources | publisher=National Center for Biotechnology Information | accessdate=2007-03-19}}
2. ^{{cite web | author=J.P. Euzéby | url=http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | title=Thermoplasmataceae | accessdate=2015-08-20 | publisher=List of Prokaryotic names with Standing in Nomenclature (LPSN) | deadurl=yes | archiveurl=https://web.archive.org/web/20110613224152/http://www.bacterio.cict.fr/classifphyla.html#Euryarchaeota | archivedate=2011-06-13 | df= }}
3. ^{{cite web |author = Sayers|display-authors = etal| url=https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=183967&lvl=4&lin=f&keep=1&srchmode=1&unlock |title=Thermoplasmata |accessdate=2015-08-20 |publisher=National Center for Biotechnology Information (NCBI) taxonomy database}}
4. ^All-Species Living Tree Project.{{cite web | url=http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_121/LTPs121_SSU_tree.pdf | title=16S rRNA-based LTP release 121 (full tree) | publisher=Silva Comprehensive Ribosomal RNA Database | accessdate=2015-08-20}}

Further reading

Scientific journals

  • {{cite journal|last1=Li|first1=Chao Lun|last2=Jiang|first2=Yun Tao|last3=Liu|first3=Da Li|last4=Qian|first4=JieLei|last5=Liang|first5=Jing Ping|last6=Shu|first6=Rong|title=Prevalence and quantification of the uncommon Archaea phylotype Thermoplasmata in chronic periodontitis|journal=Archives of Oral Biology|date=August 2014|volume=59|issue=8|pages=822–828|doi=10.1016/j.archoralbio.2014.05.011}}
  • {{cite journal|last1=Poulsen|first1=Morten|last2=Schwab|first2=Clarissa|last3=Jensen|first3=Bent Borg|last4=Engberg|first4=Ricarda M.|last5=Spang|first5=Anja|last6=Canibe|first6=Nuria|last7=Hojberg|first7=Ole|title=Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen|journal=Nature Communications|date=June 2013|volume=4|issue=1428|doi=10.1038/ncomms2847|bibcode=2013NatCo...4E1947P}}
  • {{cite journal | last = Cavalier-Smith | first = T | date = 2002 | title = The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification | journal = Int. J. Syst. Evol. Microbiol. | volume = 52 | pages = 7–76 | pmid = 11837318 | issue = Pt 1 | doi=10.1099/00207713-52-1-7}}
  • {{cite journal | last = Woese | first = CR |author2=Kandler O |author3=Wheelis ML | date = 1990 | title = Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya | journal = Proc. Natl. Acad. Sci. USA | volume = 87 | pages = 4576–4579 | pmid = 2112744 | doi = 10.1073/pnas.87.12.4576 | issue = 12 | pmc = 54159 | bibcode=1990PNAS...87.4576W}}

Scientific books

  • {{cite book | last = Reysenbach | first = AL | date = 2001 | chapter = Class IV. Thermoplasmata class. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = 169 }}
  • {{cite book | author = Garrity GM | author2 = Holt JG | date = 2001 | chapter = Phylum AII. Euryarchaeota phy. nov. | title = Bergey's Manual of Systematic Bacteriology Volume 1: The Archaea and the deeply branching and phototrophic Bacteria | edition = 2nd | editor = DR Boone | editor2 = RW Castenholz | publisher = Springer Verlag | location = New York | isbn = 978-0-387-98771-2 | page = 169 }}

Scientific databases

{{Taxonomic references|taxon=Thermoplasmata}}

External links

{{Taxonomic links|microbe=yes|NCBI_taxID=183967|taxoname=Thermoplasmata|LSPN_letter=t|LSPN_taxoname=thermoplasmata}}{{Archaea classification}}{{Taxonbar|from=Q1135456}}{{Euryarchaeota-stub}}

2 : Archaea classes|Euryarchaeota

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