| 词条 | Alex Bateman |
| 释义 |
| name = Alex Bateman | birth_name = Alexander George Bateman | native_name_lang = | image = Alex Bateman ISMBECCB 2013.jpg | image_size = | alt = | caption = Alex Bateman speaking at the Intelligent Systems for Molecular Biology (ISMB) conference in Berlin in 2013 | birth_date = {{Birth date and age|1972|10|09}}[1] | birth_place = | other_names = | residence = | citizenship = | nationality = | fields = {{Plainlist|
| workplaces = {{Plainlist|
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| thesis_title = Evolution of the structure and function of the immunoglobulin superfamily | thesis_url = http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.596466 | thesis_year = 1997 | doctoral_advisor = Cyrus Chothia | academic_advisors = Richard M. Durbin[3] | doctoral_students = | notable_students = | known_for = {{Plainlist|
| influences = | influenced = | awards = {{Plainlist|
| signature = | signature_alt = | website = {{URL|http://www.ebi.ac.uk/about/people/alex-bateman}} | footnotes = | spouse = | children = }}Alexander George Bateman is a computational biologist and Head of Protein Sequence Resources at the European Bioinformatics Institute (EBI), part of the European Molecular Biology Laboratory (EMBL) in Cambridge, UK.[6][7] He has led the development of the Pfam biological database[8] and introduced the Rfam database of RNA families. He has also been involved in the use of Wikipedia for community-based annotation of biological databases.[9][10][11][12][13] EducationBateman received a Bachelor of Science degree in Biochemistry from Newcastle University in 1994. He received his PhD from the University of Cambridge in 1997, for research supervised by Cyrus Chothia[14][15] on the evolution of the immunoglobulin protein superfamily.[16][17] During this time, he also worked with Sean Eddy to discover novel protein domains using the HMMER software.[18] Career and researchIn 1997, Bateman joined the Wellcome Trust Sanger Institute to lead the development of the Pfam biological database. In 2003, he introduced the Rfam database of RNA families.[19][18] He was also involved in providing protein analysis for the publication of the human genome.[18][20] As of 2012, he has been Head of Protein Sequence Resources at EMBL-EBI.[21] Bateman has also been involved in promoting the use of Wikipedia within the science community[22] and in particular, community-based annotation of biological databases through Wikipedia, for example, annotation of the Rfam database through WikiProject RNA.[23] Bateman served as Executive Editor of the journal Bioinformatics from 2004 to 2012 and has also served as Editor of Nucleic Acids Research, Genome Biology and Current Protocols in Bioinformatics.[2][24] In 2014, he was appointed one of the first Honorary Editors of Bioinformatics.[25] As of 2015, Bateman also serves on the ISCB Board of Directors.[26] Awards and honoursBateman was awarded the 2010 Benjamin Franklin Award in bioinformatics.[27][28] He became the third former member of Richard Durbin's lab to win the award, following Sean Eddy and Ewan Birney.[27][29] Bateman was elected an ISCB Fellow in 2017 by the International Society for Computational Biology.[30][31] References1. ^{{LCAuth|n2013022816|Alex Bateman||}} {{Authority control}}{{ISCB Fellows}}{{DEFAULTSORT:Bateman, Alex}}2. ^1 {{cite web|title=Alex Bateman: Senior Team Leader Protein Sequence Resources and Group Leader Bateman Research Group|publisher=Uniprot.org|url=https://www.uniprot.org/help/bateman|archivedate=2015-03-16|archiveurl=https://web.archive.org/web/20150316083837/http://www.uniprot.org/help/bateman}} 3. ^{{Cite journal | first1 = A. | last1 = Bateman | authorlink1 = Alex Bateman| first2 = L. | last2 = Coin | first3 = R. | last3 = Durbin | authorlink3 = Richard M. Durbin | first4 = R. D. | last4 = Finn | first5 = V. | last5 = Hollich | first6 = S. | last6 = Griffiths-Jones | first7 = A. | last7 = Khanna | first8 = M. | last8 = Marshall | first9 = S. | last10 = Sonnhammer | last9 = Moxon | first10 = E. L. | last11 = Studholme | first11 = D. J. | last12 = Yeats | first12 = C. | last13 = Eddy | first13 = S. R.| authorlink13 = Sean Eddy| title = The Pfam protein families database| journal = Nucleic Acids Research| volume = 32| issue = Database issue| pages = 138D–1141| year=2004 | issn = 0305-1048| pmid = 14681378| doi = 10.1093/nar/gkh121| pmc = 308855}} {{open access}} 4. ^{{Cite journal | pmid = 18344544| year = 2008| author1 = Sammut| first1 = S. J.| title = Pfam 10 years on: 10,000 families and still growing| journal = Briefings in Bioinformatics| volume = 9| issue = 3| pages = 210–9| last2 = Finn| first2 = R. D.| last3 = Bateman| first3 = A| doi = 10.1093/bib/bbn010}} 5. ^{{Cite journal | pmid = 16381832| pmc = 1347474| year = 2006| author1 = Griffiths-Jones| first1 = S| title = MiRBase: MicroRNA sequences, targets and gene nomenclature| journal = Nucleic Acids Research| volume = 34| issue = Database issue| pages = D140-4| last2 = Grocock| first2 = R. J.| last3 = Van Dongen| first3 = S| last4 = Bateman| first4 = A| last5 = Enright| first5 = A. J.| doi = 10.1093/nar/gkj112}} 6. ^1 {{Google Scholar id}} 7. ^{{DBLP|name=Alex Bateman}} 8. ^{{Cite journal| last1 = Finn | first1 = R. D.| last2 = Mistry | first2 = J.| last3 = Schuster-Böckler | first3 = B.| last4 = Griffiths-Jones | first4 = S.| last5 = Hollich | first5 = V.| last6 = Lassmann | first6 = T.| last7 = Moxon | first7 = S.| last8 = Marshall | first8 = M.| last9 = Khanna | first9 = A.| last10 = Durbin | first10 = R.| last11 = Eddy | first11 = S. R.| last12 = Sonnhammer | first12 = E. L.| last13 = Bateman | first13 = A.| title = Pfam: clans, web tools and services| url = http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=16381856| format = Free full text| journal = Nucleic Acids Research| volume = 34| issue = Database issue| pages = D247–D251| date=Jan 2006 | issn = 0305-1048| pmid = 16381856| doi = 10.1093/nar/gkj149| pmc = 1347511}} 9. ^{{Cite journal | last1 = Logan | first1 = D. W. | last2 = Sandal | first2 = M. | last3 = Gardner | first3 = P. P. | authorlink3 =| last4 = Manske | first4 = M. | authorlink4 = Magnus Manske| last5 = Bateman | first5 = A. | authorlink5 = Alex Bateman| title = Ten Simple Rules for Editing Wikipedia | doi = 10.1371/journal.pcbi.1000941 | journal = PLOS Computational Biology | volume = 6 | issue = 9 | pages = e1000941 | year = 2010 | pmid = 20941386| pmc =2947980 }} {{open access}} 10. ^{{cite web|title=Bateman group < Research < EMBL-EBI|url=http://www.ebi.ac.uk/research/bateman|archivedate=2013-10-01|publisher=European Bioinformatics Institute|archiveurl=https://web.archive.org/web/20131001121800/http://www.ebi.ac.uk/research/bateman}} 11. ^{{EuropePMC|ORCID=0000-0002-6982-4660}} 12. ^{{Scopus|id=7102456158}} 13. ^{{Cite journal | last1 = Burge | first1 = S. | last2 = Attwood | first2 = T. K. | authorlink2 = Terri Attwood| last3 = Bateman | first3 = A. | authorlink3 = Alex Bateman| last4 = Berardini | first4 = T. Z. | last5 = Cherry | first5 = M. | last6 = O'Donovan | first6 = C. | last7 = Xenarios | first7 = L. | last8 = Gaudet | first8 = P. | doi = 10.1093/database/bar059 | title = Biocurators and Biocuration: Surveying the 21st century challenges | journal = Database | volume = 2012 | pages = bar059 | year = 2012 | pmid = 22434828| pmc =3308150 }} 14. ^{{Cite journal | pmid = 8880921| pmc = 2143528| year = 1996| author1 = Bateman | first1 = A | authorlink1 = Alex Bateman| title = Members of the immunoglobulin superfamily in bacteria| journal = Protein Science| volume = 5| issue = 9| pages = 1939–41| last2 = Eddy| first2 = S. R.|authorlink2 = Sean Eddy| last3 = Chothia| first3 = C|authorlink3= Cyrus Chothia| doi = 10.1002/pro.5560050923}} 15. ^{{Cite journal | pmid = 8947027| pmc = 452426| year = 1996| author1 = Bateman| first1 = A| title = Outline structure of the human L1 cell adhesion molecule and the sites where mutations cause neurological disorders| journal = The EMBO Journal| volume = 15| issue = 22| pages = 6050–9| last2 = Jouet| first2 = M| last3 = MacFarlane| first3 = J| last4 = Du| first4 = J. S.| last5 = Kenwrick| first5 = S| last6 = Chothia| first6 = C}} 16. ^{{cite thesis |degree=PhD |first=Alexander George|last=Bateman |title=Evolution of the structure and function of the immunoglobulin superfamily |publisher=University of Cambridge |date=1997|oclc=879391333 |url=http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.596466|website=ethos.bl.uk}} 17. ^{{Cite journal | pmid = 9655353| pmc = 2144021| year = 1998| author1 = Bateman| first1 = A| authorlink1 = Alex Bateman| title = Structure and distribution of pentapeptide repeats in bacteria| journal = Protein Science| volume = 7| issue = 6| pages = 1477–80| last2 = Murzin| first2 = A. G.| last3 = Teichmann| first3 = S. A.| authorlink3 = Sarah Teichmann| doi = 10.1002/pro.5560070625}} 18. ^1 2 {{cite web|title=Archive page: Dr Alex Bateman - Wellcome Trust Sanger Institute|url=https://www.sanger.ac.uk/research/faculty/abateman/|publisher=Wellcome Trust Sanger Institute|archivedate= 2014-10-13|archiveurl=https://web.archive.org/web/20141013222743/http://www.sanger.ac.uk/research/faculty/abateman/}} 19. ^1 {{Cite journal | pmid = 12520045| pmc = 165453| year = 2003| author1 = Griffiths-Jones| first1 = S| title = Rfam: An RNA family database| journal = Nucleic Acids Research| volume = 31| issue = 1| pages = 439–41| last2 = Bateman| first2 = A| last3 = Marshall| first3 = M| last4 = Khanna| first4 = A| last5 = Eddy| first5 = S. R. | doi=10.1093/nar/gkg006}} 20. ^{{cite journal|display-authors=1|last1=Lander|first1=Eric S.|last2=Linton|first2=Lauren M.|last3=Birren|first3=Bruce|last4=Nusbaum|first4=Chad|last5=Zody|first5=Michael C.|last6=Baldwin|first6=Jennifer|last7=Devon|first7=Keri|last8=Dewar|first8=Ken|last9=Doyle|first9=Michael|last10=FitzHugh|first10=William|last11=Funke|first11=Roel|last12=Gage|first12=Diane|last13=Harris|first13=Katrina|last14=Heaford|first14=Andrew|last15=Howland|first15=John|last16=Kann|first16=Lisa|last17=Lehoczky|first17=Jessica|last18=LeVine|first18=Rosie|last19=McEwan|first19=Paul|last20=McKernan|first20=Kevin|last21=Meldrim|first21=James|last22=Mesirov|first22=Jill P.|last23=Miranda|first23=Cher|last24=Morris|first24=William|last25=Naylor|first25=Jerome|last26=Raymond|first26=Christina|last27=Rosetti|first27=Mark|last28=Santos|first28=Ralph|last29=Sheridan|first29=Andrew|last30=Sougnez|first30=Carrie|last31=Stange-Thomann|first31=Nicole|last32=Stojanovic|first32=Nikola|last33=Subramanian|first33=Aravind|last34=Wyman|first34=Dudley|last35=Rogers|first35=Jane|last36=Sulston|first36=John|last37=Ainscough|first37=Rachael|last38=Beck|first38=Stephan|last39=Bentley|first39=David|last40=Burton|first40=John|last41=Clee|first41=Christopher|last42=Carter|first42=Nigel|last43=Coulson|first43=Alan|last44=Deadman|first44=Rebecca|last45=Deloukas|first45=Panos|last46=Dunham|first46=Andrew|last47=Dunham|first47=Ian|last48=Durbin|first48=Richard|last49=French|first49=Lisa|last50=Grafham|first50=Darren|last51=Gregory|first51=Simon|last52=Hubbard|first52=Tim|last53=Humphray|first53=Sean|last54=Hunt|first54=Adrienne|last55=Jones|first55=Matthew|last56=Lloyd|first56=Christine|last57=McMurray|first57=Amanda|last58=Matthews|first58=Lucy|last59=Mercer|first59=Simon|last60=Milne|first60=Sarah|last61=Mullikin|first61=James C.|last62=Mungall|first62=Andrew|last63=Plumb|first63=Robert|last64=Ross|first64=Mark|last65=Shownkeen|first65=Ratna|last66=Sims|first66=Sarah|last67=Waterston|first67=Robert H.|last68=Wilson|first68=Richard K.|last69=Hillier|first69=LaDeana W.|last70=McPherson|first70=John D.|last71=Marra|first71=Marco A.|last72=Mardis|first72=Elaine R.|last73=Fulton|first73=Lucinda A.|last74=Chinwalla|first74=Asif T.|last75=Pepin|first75=Kymberlie H.|last76=Gish|first76=Warren R.|last77=Chissoe|first77=Stephanie L.|last78=Wendl|first78=Michael C.|last79=Delehaunty|first79=Kim D.|last80=Miner|first80=Tracie L.|last81=Delehaunty|first81=Andrew|last82=Kramer|first82=Jason B.|last83=Cook|first83=Lisa L.|last84=Fulton|first84=Robert S.|last85=Johnson|first85=Douglas L.|last86=Minx|first86=Patrick J.|last87=Clifton|first87=Sandra W.|last88=Hawkins|first88=Trevor|last89=Branscomb|first89=Elbert|last90=Predki|first90=Paul|last91=Richardson|first91=Paul|last92=Wenning|first92=Sarah|last93=Slezak|first93=Tom|last94=Doggett|first94=Norman|last95=Cheng|first95=Jan-Fang|last96=Olsen|first96=Anne|last97=Lucas|first97=Susan|last98=Elkin|first98=Christopher|last99=Uberbacher|first99=Edward|last100=Frazier|first100=Marvin|last101=Gibbs|first101=Richard A.|last102=Muzny|first102=Donna M.|last103=Scherer|first103=Steven E.|last104=Bouck|first104=John B.|last105=Sodergren|first105=Erica J.|last106=Worley|first106=Kim C.|last107=Rives|first107=Catherine M.|last108=Gorrell|first108=James H.|last109=Metzker|first109=Michael L.|last110=Naylor|first110=Susan L.|last111=Kucherlapati|first111=Raju S.|last112=Nelson|first112=David L.|last113=Weinstock|first113=George M.|last114=Sakaki|first114=Yoshiyuki|last115=Fujiyama|first115=Asao|last116=Hattori|first116=Masahira|last117=Yada|first117=Tetsushi|last118=Toyoda|first118=Atsushi|last119=Itoh|first119=Takehiko|last120=Kawagoe|first120=Chiharu|last121=Watanabe|first121=Hidemi|last122=Totoki|first122=Yasushi|last123=Taylor|first123=Todd|last124=Weissenbach|first124=Jean|last125=Heilig|first125=Roland|last126=Saurin|first126=William|last127=Artiguenave|first127=Francois|last128=Brottier|first128=Philippe|last129=Bruls|first129=Thomas|last130=Pelletier|first130=Eric|last131=Robert|first131=Catherine|last132=Wincker|first132=Patrick|last133=Rosenthal|first133=André|last134=Platzer|first134=Matthias|last135=Nyakatura|first135=Gerald|last136=Taudien|first136=Stefan|last137=Rump|first137=Andreas|last138=Smith|first138=Douglas R.|last139=Doucette-Stamm|first139=Lynn|last140=Rubenfield|first140=Marc|last141=Weinstock|first141=Keith|last142=Lee|first142=Hong Mei|last143=Dubois|first143=JoAnn|last144=Yang|first144=Huanming|last145=Yu|first145=Jun|last146=Wang|first146=Jian|last147=Huang|first147=Guyang|last148=Gu|first148=Jun|last149=Hood|first149=Leroy|last150=Rowen|first150=Lee|last151=Madan|first151=Anup|last152=Qin|first152=Shizen|last153=Davis|first153=Ronald W.|last154=Federspiel|first154=Nancy A.|last155=Abola|first155=A. 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A.|last217=Stupka|first217=Elia|last218=Szustakowki|first218=Joseph|last219=Thierry-Mieg|first219=Danielle|last220=Thierry-Mieg|first220=Jean|last221=Wagner|first221=Lukas|last222=Wallis|first222=John|last223=Wheeler|first223=Raymond|last224=Williams|first224=Alan|last225=Wolf|first225=Yuri I.|last226=Wolfe|first226=Kenneth H.|last227=Yang|first227=Shiaw-Pyng|last228=Yeh|first228=Ru-Fang|last229=Collins|first229=Francis|last230=Guyer|first230=Mark S.|last231=Peterson|first231=Jane|last232=Felsenfeld|first232=Adam|last233=Wetterstrand|first233=Kris A.|last234=Myers|first234=Richard M.|last235=Schmutz|first235=Jeremy|last236=Dickson|first236=Mark|last237=Grimwood|first237=Jane|last238=Cox|first238=David R.|last239=Olson|first239=Maynard V.|last240=Kaul|first240=Rajinder|last241=Raymond|first241=Christopher|last242=Shimizu|first242=Nobuyoshi|last243=Kawasaki|first243=Kazuhiko|last244=Minoshima|first244=Shinsei|last245=Evans|first245=Glen A.|last246=Athanasiou|first246=Maria|last247=Schultz|first247=Roger|last248=Patrinos|first248=Aristides|last249=Morgan|first249=Michael J.|title=Initial sequencing and analysis of the human genome|journal=Nature|date=15 February 2001|volume=409|issue=6822|pages=860–921|doi=10.1038/35057062|pmid=11237011}} 21. ^{{cite web|title=Alex Bateman < People & Groups < About us < EMBL-EBI|url=http://www.ebi.ac.uk/about/people/alex-bateman|archivedate=2013-10-01|archiveurl=https://web.archive.org/web/20131001200201/http://www.ebi.ac.uk/about/people/alex-bateman|publisher=EBI}} 22. ^{{cite web|first=Alex|last=Bateman|year=2012|title=Why scientists should be publishing on Wikipedia|publisher=Wired UK|url=https://www.wired.co.uk/magazine/archive/2012/05/ideas-bank/scientists-should-be-publishing-on-wikipedia|archiveurl=https://web.archive.org/web/20120709062931/http://www.wired.co.uk/magazine/archive/2012/05/ideas-bank/scientists-should-be-publishing-on-wikipedia|archivedate=2012-07-09}} 23. ^{{Cite journal | last1 = Daub | first1 = J. | last2 = Gardner | first2 = P. P. | authorlink2 = | last3 = Tate | first3 = J. | last4 = Ramsköld | first4 = D. | last5 = Manske | first5 = M. | authorlink5 = Magnus Manske| last6 = Scott | first6 = W. G. | last7 = Weinberg | first7 = Z. | last8 = Griffiths-Jones | first8 = S. | last9 = Bateman | first9 = A. | authorlink9 = | doi = 10.1261/rna.1200508 | title = The RNA WikiProject: Community annotation of RNA families | journal = RNA | volume = 14 | issue = 12 | pages = 2462–2464 | year = 2008 | pmid = 18945806| pmc =2590952 }} 24. ^1 {{cite web|url=https://publons.com/author/259342/alex-bateman|title=Alex Bateman Publons|publisher=Publons.com|archiveurl=https://web.archive.org/web/20150316092353/https://publons.com/author/259342/alex-bateman|archivedate=2015-03-16}} 25. ^{{Cite journal| author = Anon | pmid = 24642573| year = 2014| title = 15 years of "Bioinformatics"| journal = Bioinformatics| volume = 30| issue = 6| pages = 747| doi = 10.1093/bioinformatics/btu076}} 26. ^{{cite web|title=Officers and board of Directors ISCB|url=http://www.iscb.org/iscb-leadership-a-staff-/officers-and-board-directors|archivedate=2014-07-24|archiveurl=https://web.archive.org/web/20140724002222/http://www.iscb.org/iscb-leadership-a-staff-/officers-and-board-directors|publisher=International Society for Computational Biology}} 27. ^1 {{cite web|title=Alex Bateman Wins 2010 Benjamin Franklin Award - Bio-IT World|url=http://www.bio-itworld.com/2010/04/01/franklin-award.html|publisher=www.bio-itworld.com|archiveurl=https://web.archive.org/web/20120814000046/http://www.bio-itworld.com/2010/04/01/franklin-award.html|archivedate=2012-08-14}} 28. ^{{cite web|title=Alex wins the Benjamin Franklin award!|publisher=Xfam Blog|url=https://xfam.wordpress.com/2010/04/01/alex-wins-the-benjamin-franklin-award/|archiveurl=https://web.archive.org/web/20100428005754/http://xfam.wordpress.com/2010/04/01/alex-wins-the-benjamin-franklin-award/|archivedate=2010-04-28}} 29. ^1 {{cite web|first=Shraddha|last=Chakradhar|year=2012|title=Heng Li Credits Durbin Pedigree in Accepting Franklin Award|url=http://www.bio-itworld.com/news/04/26/12/Heng-Li-credits-Durbin-pedigree-Franklin-Award.html|archivedate=2013-03-30|archiveurl=https://web.archive.org/web/20130330132717/http://www.bio-itworld.com/news/04/26/12/Heng-Li-credits-Durbin-pedigree-Franklin-Award.html|publisher=bio-itworld.com}} 30. ^1 {{cite web|archiveurl=https://web.archive.org/web/20170320114530/https://www.iscb.org/iscb-fellows |archivedate=2017-03-20 |url=https://www.iscb.org/iscb-fellows |website=iscb.org |title=ISCB Fellows |publisher=International Society for Computational Biology |author=Anon |year=2017 |deadurl=yes }} 31. ^{{cite web|title=February 13, 2017: The International Society for Computational Biology Names Seven Members as the ISCB Fellows Class of 2017|url=https://www.iscb.org/iscb-news-items/3067-2017-feb13-iscb-fellows-class-2017|website=www.iscb.org|accessdate=13 February 2017}} 7 : 20th-century British biologists|21st-century British biologists|Living people|Bioinformaticians|Computational biologists|Fellows of the International Society for Computational Biology|1972 births |
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