“ARMCX5”的意思、由来-开放百科全书

词条

ARMCX5

释义

Features
Splice Variants
ORTHOLOGS
Paralogs
Function
Expression
References

ARMCX5 is an armadillo repeat–containing protein that is encoded by the X-linked ARMCX5 gene. It is conserved only in Eutheria,^[1] a specific group of placental mammals, but no further back in evolutionary time. ARMCX5 contains 3 ARM-like repeats, DUF364, and ARM-type fold.^[2]

Features

Accession Number	NC_0002.10
Aliases	FLJ12969, FLJ13382, and RP4-769N13.3
Chromosomal location	Xq22.1-q22.3
Gene size	4991 base pairs
mRNA size	2924 base pairs
Protein size	588 amino acids

^[3]

Splice Variants

ARMCX5 has 6 splice variants.

Splice isoform/transcript variant	mRNA sequence length	Accession number
1	2924	NM_001168479.1
2	2695	NM_022838.3
3	2808	NM_001168478.1
4	2918	NM_001168480.1
5	2805	NM_001168485.1
6	2707	NM_001168482.1

^[3]

ORTHOLOGS

ARMCX5 has ten orthologs.

Ortholog genus name	Common name	Accession number	Sequence length	Sequence identity	Sequence similarity
Pongo abelli	Orangatuan	XP_002831961.1	547	97.1%	99%
Macaca mulata	Rhesus monkey	EHH30927.1	558	95.3%	97%
Macaca fascicularis	Crab eating macaque	EHH61076.1	558	95%	97%
Callithrix Jacchus	Common marmoset	XP_002763850.1	568	89.4%	93%
Equus caballus	Horse	NC009175.2	609	80%	85%
Canis lupus familiaris	dog	XP_538116.2	608	79%	85%
Sus scrofa	Common pig	XP_003135327.2	732	78%	85%
Oryctolagus cuniculus	Common rabbit	XP_00272091.1	547	76.8%	85%
Rattus norvegicus	Common rat	XP_001499348.2	567	61.1%	76%
Mus musculus	Mouse	NP_001009575.2	606	57%	71%

^[4]

Paralogs

ARMCX5 has 8 paralogs listed by genecards: GPRASP2, ARMCX1, BHLHB9, ARMCX2, GPRASP1, ARMCX6, ARMCX10, and ARMCX3.^[2]

Function

Proteins containing this ARMCX5 domain interact with numerous other proteins. Through these interactions, they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation f circadian rhythm and lysosomal sorting of G-protein coupled receptors.^[2]

Because DUF364 contains a PLP-dependent transferase-like fold, the genomic context suggests that it may have a role in anaerobic vitamin B12 biosynthesis.^[5]

Expression

ARMCX5 is a highly ubiquitously expressed gene that has shown expression in many tissues.

Body Site	Transcripts per million	Gene EST/Total EST in pool
Brain	25	28/1092524
Bone marrow	82	4/48711
Mouth	60	4/66139
Vascular	58	3/51637
Spleen	56	3/53365
Mammary gland	52	8/151228
Esophagus	49	1/20152
Larynx	42	1/23489
Trachea	38	2/51769
Muscle	37	4/106323
Testes	33	11/327305

^[6]

References

1. ^{{cite web|title=BLAT|url=http://genome.ucsc.edu/cgi-bin/hgBlat|publisher=UCSC Genome Bioinformatics}}
2. ^¹²{{cite web|title=ARMCX5|url=https://www.genecards.org/index.php?path=/Search/keyword/armcx5|publisher=Gene cards}}
3. ^¹{{cite web|title=NCBI- nucleotide|url=https://www.ncbi.nlm.nih.gov/nuccore}}
4. ^{{cite web|title=NCBI BLAST|url=http://blast.ncbi.nlm.nih.gov/Blast.cgi}}
5. ^{{cite web|title=NCBI-protein|url=https://www.ncbi.nlm.nih.gov/protein}}
6. ^{{cite web|title=NCBI-EST profiles|url=https://www.ncbi.nlm.nih.gov/UniGene/ESTProfileViewer.cgi?uglist=Hs.522729}}

2 : Genes on human chromosome X|Armadillo-repeat-containing proteins

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