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词条 Christoph Steinbeck
释义

  1. Education

  2. Research

  3. References

  4. External links

{{Infobox scientist
|name = Christoph Steinbeck
|image =
|image_size =
|caption = Christoph Steinbeck
|birth_date = {{Birth year and age|1966}}[1]
|birth_place = Neuwied
|residence = Germany
|nationality = German
|fields = {{Plainlist|
  • Cheminformatics
  • Bioinformatics
  • Metabolism[2]}}

|workplaces = {{Plainlist|
  • Friedrich-Schiller-Universität Jena
  • EMBL-EBI
  • Tufts University
  • Max Planck Institute for Chemical Ecology{{citation needed|date=April 2014}}
  • Cologne University{{citation needed|date=April 2014}}
  • University of Bonn}}

|alma_mater = University of Bonn
| thesis_title = LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie
| thesis_url = http://d-nb.info/948048905
| thesis_year = 1995
|doctoral_advisor =
|academic_advisors =
|doctoral_students = {{Plainlist|
  • Yongquan Han[2][3]
  • Tobias Helmus[4][5][6]
  • Thomas Kuhn[7][8]
  • Pablo Moreno[9][10][11]
  • John May[12][13][14]
  • Stephan Beisken[15][16][17][18][19]

}}
|notable_students =
|known_for = {{Plainlist|
  • Chemistry Development Kit
  • Journal of Cheminformatics
  • JChemPaint
  • ChEBI}}

|influences =
|influenced =
|awards = Blue Obelisk award[20]
|signature =
| website = {{URL|www.steinbeck-molecular.de}}
|footnotes =
|religion =
}}Christoph Steinbeck is a chemist born in Neuwied[21] in 1966 and has a professorship for analytical chemistry, cheminformatics and chemometrics at the Friedrich-Schiller-Universität Jena in Thuringia, Germany.[22][23]

Education

Steinbeck received his PhD from the University of Bonn[24] in 1995 for work on LUCY, a software program for structural elucidation from nuclear magnetic resonance (NMR) correlation experiments.[25] In 2003 he received his habilitation.[26]

Research

Steinbeck's research interests[27][28][29][30] have involved the elucidation of chemical structures of metabolites. He was one of the first chemists to develop open source tools for cheminformatics. He initiated JChemPaint,[31] was founder of the Chemistry Development Kit,[32][33] and is responsible for leading the team working on Chemical Entities of Biological Interest (ChEBI).[34][35][36][37][38] He headed the Cheminformatics and Metabolomics group at the European Molecular Biology Laboratory-European Bioinformatics Institute in Cambridge, United Kingdom from 2008 to 2016. He became a professor for analytical chemistry, cheminformatics and chemometrics at the Friedrich-Schiller-Universität Jena in Thuringia, Germany in March 2017. Together with a few other chemists he was a founder member of the Blue Obelisk[39][40] movement in 2005.[41]

Steinbeck is editor-in-chief of the Journal of Cheminformatics, director of the Metabolomics Society,[42] past chair of the Computers-Information-Chemistry division of the German Chemical Society, past trustee of the Chemical Structure Association Trust,[43] and a lifetime member of the World Association of Theoretically Oriented Chemists.[44]

References

{{Scholia}}
1. ^{{cite web |title=Steinbeck, Christoph |work=DNB, Katalog der Deutschen Nationalbibliothek |publisher=German National Library |id={{GND|128763922}}}}
2. ^{{cite thesis |degree=PhD |first=Yongquan|last=Han|title=Evolutionary Algorithm as an Approach for Computer Assisted Structure Elucidation of Organic and Bioorganic Compounds |publisher=Friedrich-Schiller-Universität Jena |date=2003 |url=http://www.db-thueringen.de/servlets/DocumentServlet?name=FSU_Jena_Han_Yongquan}}
3. ^{{Cite journal | pmid = 15032528| year = 2004| author1 = Han| first1 = Y| title = Evolutionary-algorithm-based strategy for computer-assisted structure elucidation| journal = Journal of Chemical Information and Modeling| volume = 44| issue = 2| pages = 489–98| last2 = Steinbeck| first2 = C| doi = 10.1021/ci034132y}}
4. ^{{cite thesis |degree=PhD |first=Tobias|last=Helmus|title=Encoding, Storing and Searching of Analytical Properties and Assigned Metabolite Structures |publisher=Universität zu Köln |date=2007 |url=http://kups.ub.uni-koeln.de/2080/}}
5. ^{{Cite journal | pmid = 17316423| year = 2007| author1 = Spjuth| first1 = O| title = Bioclipse: An open source workbench for chemo- and bioinformatics| journal = BMC Bioinformatics| volume = 8| pages = 59| last2 = Helmus| first2 = T| last3 = Willighagen| first3 = E. L.| last4 = Kuhn| first4 = S| last5 = Eklund| first5 = M| last6 = Wagener| first6 = J| last7 = Murray-Rust| first7 = P| last8 = Steinbeck| first8 = C| last9 = Wikberg| first9 = J. E.| doi = 10.1186/1471-2105-8-59| pmc = 1808478}}
6. ^{{Cite journal | pmid = 17887743| year = 2007| author1 = Kuhn| first1 = S| title = Chemical Markup, XML, and the World Wide Web. 7. CMLSpect, an XML vocabulary for spectral data| journal = Journal of Chemical Information and Modeling| volume = 47| issue = 6| pages = 2015–34| last2 = Helmus| first2 = T| last3 = Lancashire| first3 = R. J.| last4 = Murray-Rust| first4 = P| last5 = Rzepa| first5 = H. S.| last6 = Steinbeck| first6 = C| last7 = Willighagen| first7 = E. L.| doi = 10.1021/ci600531a}}
7. ^{{cite thesis |degree=PhD |first=Thomas|last=Kuhn|title=Open Source Workflow Engine for Cheminformatics: From Data Curation to Data Analysis |publisher=Universität zu Köln |date=2009 |url=http://kups.ub.uni-koeln.de/2660/}}
8. ^{{Cite journal | pmid = 20346188| year = 2010| author1 = Kuhn| first1 = T| title = CDK-Taverna: An open workflow environment for cheminformatics| journal = BMC Bioinformatics| volume = 11| pages = 159| last2 = Willighagen| first2 = E. L.| last3 = Zielesny| first3 = A| last4 = Steinbeck| first4 = C| doi = 10.1186/1471-2105-11-159| pmc = 2862046}}
9. ^{{cite thesis |degree=PhD |first=Pablo|last=Moreno |title=Bioinformatic methods for species-specific metabolome inference |publisher=University of Cambridge |date=2012 |url=http://www.ebi.ac.uk/research/publications/theses}}
10. ^{{Cite journal | last1 = Foster | first1 = J. M. | last2 = Moreno | first2 = P. | last3 = Fabregat | first3 = A. | last4 = Hermjakob | first4 = H. | last5 = Steinbeck | first5 = C. | authorlink5 = Christoph Steinbeck| last6 = Apweiler | first6 = R. | authorlink6 = Rolf Apweiler| last7 = Wakelam | first7 = M. J. O. | last8 = Vizcaíno | first8 = J. A. | editor1-last = Oresic | editor1-first = Matej | doi = 10.1371/journal.pone.0061951 | title = LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics | journal = PLoS ONE | volume = 8 | issue = 5 | pages = e61951 | year = 2013 | pmid = 23667450 | pmc =3646891 }}
11. ^{{Cite journal | last1 = Jayaseelan | first1 = K. V. | last2 = Moreno | first2 = P. | last3 = Truszkowski | first3 = A. | last4 = Ertl | first4 = P. | last5 = Steinbeck | first5 = C. | authorlink5 = Christoph Steinbeck| title = Natural product-likeness score revisited: An open-source, open-data implementation | doi = 10.1186/1471-2105-13-106 | journal = BMC Bioinformatics | volume = 13 | pages = 106 | year = 2012 | pmid = 22607271 | pmc =3436723 }}
12. ^{{cite thesis |degree=PhD |first=John|last=May |title=Cheminformatics for Genome Scale Reconstruction |publisher=University of Cambridge |date=2015 |url=https://www.repository.cam.ac.uk/handle/1810/246652}}
13. ^{{Cite journal | last1 = May | first1 = J. W. | last2 = James | first2 = A. G. | last3 = Steinbeck | first3 = C. | authorlink3 = Christoph Steinbeck| title = Metingear: a development environment for annotating genome-scale metabolic models| doi = 10.1093/bioinformatics/btt342| journal = Bioinformatics | volume = 29 | issue = 17| pages = 2213–2215 | year = 2013 | pmid = 23766418| pmc = 3740624}}
14. ^{{Cite journal | last1 = May | first1 = J. W. | last2 = Steinbeck | first2 = C. | authorlink2 = Christoph Steinbeck| title = Efficient ring perception for the Chemistry Development Kit| doi = 10.1186/1758-2946-6-3| journal = Journal of Cheminformatics | volume = 6 | issue = 3| year = 2014 | pmid = 24479757| pmc = 3922685}}
15. ^{{cite thesis |degree=PhD |first=Stephan|last=Beisken |title=Informatics for Tandem Mass Spectrometry-based Metabolomics |publisher=University of Cambridge |date=2015 |url=https://www.ebi.ac.uk/sites/ebi.ac.uk/files/shared/documents/phdtheses/Beisken.pdf}}
16. ^{{Cite journal | last1 = Beisken | first1 = S. | last2 = Meinl | first2 = T. | last3 = Wiswedel | first3 = B. | last4 = de Figueiredo | first4 = L. | last5 = Berthold | first5 = M. | last6 = Steinbeck | first6 = C. | authorlink6 = Christoph Steinbeck| title = KNIMECDK: Workflow-driven Cheminformatics| doi = 10.1186/1471-2105-14-257| journal = BMC Bioinformatics | volume = 14| issue = 1| pages = 257–260| year = 2013 | pmid=24103053 | pmc=3765822}}
17. ^{{Cite journal | last1 = Beisken | first1 = S. | last2 = Portwood | first2 = D.| last3 = Seymour | first3 = M.| last4 = Steinbeck | first4 = C. | authorlink4 = Christoph Steinbeck| title = MassCascade: Visual programming for LC-MS data processing in metabolomics| doi = 10.1002/minf.201400016| journal = Molecular Informatics | volume = 33| issue = 4| pages = 307–310| year = 2014 | pmc = 4524413}}
18. ^{{Cite journal | last1 = Beisken | first1 = S. | last2 = Earll | first2 = M.| last3 = Baxter | first3 = C.| last4 = Portwood | first4 = D. | last5 = Ament | first5 = Z. | last6 = Kende | first6 = A. | last7 = Hodgman | first7 = C. | last8 = Seymour | first8 = G. | last9 = Smith | first9 = R. | last10 = Fraser | first10 = P.| last11 = Seymour | first11 = M. | last12 = Steinbeck | first12 = C. | authorlink12 = Christoph Steinbeck| title = Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants| doi = 10.1038/sdata.2014.29| pmid = 25977786 | pmc = 4322568 | journal = Scientific Data | volume = 1| issue = 1| year = 2014 | pages=140029}}
19. ^{{Cite journal | last1 = Beisken | first1 = S. | last2 = Conesa | first2 = P.| last3 = Haug | first3 = K.| last4 = Reza | first4 = S.| last5 = Steinbeck | first5 = C. | authorlink5 = Christoph Steinbeck| title = SpeckTackle: JavaScript Charts for Spectroscopy| doi = 10.1186/s13321-015-0065-7| journal = Journal of Cheminformatics| volume = 7| issue = 17| year = 2015 }}
20. ^Murray-Rust, P. Blue Obelisk Award – Christoph Steinbeck of CDK. http://blogs.ch.cam.ac.uk/pmr/2006/09/14/blue-obelisk-award-christoph-steinbeck-of-cdk/
21. ^{{URL|http://www.metabolomicssociety.org/people/christoph-steinbeck}}
22. ^{{Cite journal | pmid = 23175605| year = 2013| author1 = Alcántara| first1 = R| title = The EBI enzyme portal| journal = Nucleic Acids Research| volume = 41| issue = Database issue| pages = D773–80| last2 = Onwubiko| first2 = J| last3 = Cao| first3 = H| last4 = Matos| first4 = Pd| last5 = Cham| first5 = J. A.| last6 = Jacobsen| first6 = J| last7 = Holliday| first7 = G. L.| last8 = Fischer| first8 = J. D.| last9 = Rahman| first9 = S. A.| last10 = Jassal| first10 = B| last11 = Goujon| first11 = M| last12 = Rowland| first12 = F| last13 = Velankar| first13 = S| last14 = López| first14 = R| last15 = Overington| first15 = J. P.| last16 = Kleywegt| first16 = G. J.| last17 = Hermjakob| first17 = H| last18 = O'Donovan| first18 = C| last19 = Martín| first19 = M. J.| last20 = Thornton| first20 = J. M.| authorlink20 = Janet Thornton| last21 = Steinbeck| first21 = C| authorlink21 = Christoph Steinbeck| doi = 10.1093/nar/gks1112| pmc = 3531056}}
23. ^{{Cite journal | pmid = 21878981| year = 2011| author1 = Orchard| first1 = S| title = Minimum information about a bioactive entity (MIABE)| journal = Nature Reviews Drug Discovery| volume = 10| issue = 9| pages = 661–9| last2 = Al-Lazikani| first2 = B| last3 = Bryant| first3 = S| last4 = Clark| first4 = D| last5 = Calder| first5 = E| last6 = Dix| first6 = I| last7 = Engkvist| first7 = O| last8 = Forster| first8 = M| last9 = Gaulton| first9 = A| last10 = Gilson| first10 = M| last11 = Glen| first11 = R| last12 = Grigorov| first12 = M| last13 = Hammond-Kosack| first13 = K| last14 = Harland| first14 = L| last15 = Hopkins| first15 = A| last16 = Larminie| first16 = C| last17 = Lynch| first17 = N| last18 = Mann| first18 = R. K.| last19 = Murray-Rust| authorlink19 = Peter Murray-Rust| first19 = P| last20 = Lo Piparo| first20 = E| last21 = Southan| first21 = C| last22 = Steinbeck| first22 = C| authorlink22 = Christoph Steinbeck| last23 = Wishart| first23 = D| last24 = Hermjakob| first24 = H| last25 = Overington| first25 = J| last26 = Thornton| first26 = J| authorlink26 = Janet Thornton| doi = 10.1038/nrd3503}}
24. ^{{cite thesis |degree=PhD |first=Christoph|last=Steinbeck |title=LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie |publisher=University of Bonn |date=1995 |authorlink=Christoph Steinbeck |id={{DNB-IDN|948048905}}}}
25. ^{{Cite journal | last1 = Steinbeck | first1 = C. | authorlink = Christoph Steinbeck| title = LUCY—A Program for Structure Elucidation from NMR Correlation Experiments | doi = 10.1002/anie.199619841 | journal = Angewandte Chemie International Edition in English | volume = 35 | issue = 17 | pages = 1984–1986 | year = 1996 | pmid = | pmc = }}
26. ^{{cite thesis |degree=Habilitation |first=Christoph|last=Steinbeck |title=Zur automatischen Strukturaufklärung organischer Verbindungen |publisher=University of Bonn |date=2003 |authorlink=Christoph Steinbeck |id={{DNB-IDN|970193602}}}}
27. ^{{Google Scholar id |name=Christoph Steinbeck}}
28. ^{{AcademicSearch|3436794}}
29. ^{{DBLP |name=Christoph Steinbeck}}
30. ^{{Scopus}}
31. ^{{Cite journal | last1 = Krause | first1 = S. | last2 = Willighagen | first2 = E. | last3 = Steinbeck | first3 = C. | authorlink3 = Christoph Steinbeck| title = JChemPaint - Using the Collaborative Forces of the Internet to Develop a Free Editor for 2D Chemical Structures | doi = 10.3390/50100093 | journal = Molecules | volume = 5 | issue = 12 | pages = 93–98 | year = 2000 | pmid = | pmc = }}
32. ^{{Cite journal | last1 = Steinbeck | first1 = C.| authorlink1 = Christoph Steinbeck | last2 = Han | first2 = Y. | last3 = Kuhn | first3 = S. | last4 = Horlacher | first4 = O. | last5 = Luttmann | first5 = E. | last6 = Willighagen | first6 = E. | doi = 10.1021/ci025584y | title = The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics | journal = Journal of Chemical Information and Modeling | volume = 43 | issue = 2 | pages = 493–500 | year = 2003 | pmid = 12653513| pmc = 4901983}}
33. ^{{Cite journal | last1 = Steinbeck | first1 = C. | authorlink1 = Christoph Steinbeck| last2 = Hoppe | first2 = C. | last3 = Kuhn | first3 = S. | last4 = Floris | first4 = M. | last5 = Guha | first5 = R. | last6 = Willighagen | first6 = E. | doi = 10.2174/138161206777585274 | title = Recent Developments of the Chemistry Development Kit (CDK) - an Open-Source Java Library for Chemo- and Bioinformatics | journal = Current Pharmaceutical Design | volume = 12 | issue = 17 | pages = 2111–2120 | year = 2006 | pmid = 16796559| pmc = }}
34. ^{{Cite journal | last1 = Hastings | first1 = J. | last2 = De Matos | first2 = P. | last3 = Dekker | first3 = A. | last4 = Ennis | first4 = M. | last5 = Harsha | first5 = B. | last6 = Kale | first6 = N. | last7 = Muthukrishnan | first7 = V. | last8 = Owen | first8 = G. | last9 = Turner | first9 = S. | last10 = Williams | first10 = M. | last11 = Steinbeck | first11 = C. | title = The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013 | doi = 10.1093/nar/gks1146 | journal = Nucleic Acids Research | volume = 41 | issue = Database issue | pages = D456–D463 | year = 2012 | pmid = 23180789 | pmc =3531142 }}
35. ^{{Cite book | last1 = Matos | first1 = P. | last2 = Adams | first2 = N. | last3 = Hastings | first3 = J. | last4 = Moreno | first4 = P. | last5 = Steinbeck | first5 = C. | authorlink5 = Christoph Steinbeck| doi = 10.1007/978-1-61779-364-6_19 | chapter = A Database for Chemical Proteomics: ChEBI | title = Chemical Proteomics | series = Methods in Molecular Biology | volume = 803 | pages = 273–296 | year = 2012 | isbn = 978-1-61779-363-9 | pmid = 22065232 | pmc = }}
36. ^{{Cite journal | last1 = Vita | first1 = R. | last2 = Peters | first2 = B. | last3 = Josephs | first3 = Z. | last4 = De Matos | first4 = P. | last5 = Ennis | first5 = M. | last6 = Turner | first6 = S. | last7 = Steinbeck | first7 = C. | authorlink7 = Christoph Steinbeck| last8 = Seymour | first8 = E. | last9 = Zarebski | first9 = L. | last10 = Sette | first10 = A. | title = A Model for Collaborative Curation, the IEDB and ChEBI Curation of Non-peptidic Epitopes | journal = Immunome Research | volume = 7 | issue = 1 | pages = 1–8 | year = 2011 | pmid = 21897450| doi = 10.4172/1745-7580.1000040 }}
37. ^{{Cite book | last1 = Degtyarenko | first1 = K. | last2 = Hastings | first2 = J. | last3 = De Matos | first3 = P. | last4 = Ennis | first4 = M. | chapter = ChEBI: An Open Bioinformatics and Cheminformatics Resource | doi = 10.1002/0471250953.bi1409s26 | title = Current Protocols in Bioinformatics |editor=Andreas D. Baxevanis| volume = 14 | pages = Unit Un14.9 | year = 2009 | isbn = 978-0471250951 | pmid = 19496059 | pmc = }}
38. ^{{Cite journal | last1 = Degtyarenko | first1 = K. | last2 = De Matos | first2 = P. | last3 = Ennis | first3 = M. | last4 = Hastings | first4 = J. | last5 = Zbinden | first5 = M. | last6 = McNaught | first6 = A. | last7 = Alcantara | first7 = R. | last8 = Darsow | first8 = M. | last9 = Guedj | first9 = M. | doi = 10.1093/nar/gkm791 | last10 = Ashburner | first10 = M. | title = ChEBI: A database and ontology for chemical entities of biological interest | journal = Nucleic Acids Research | volume = 36 | issue = Database issue | pages = D344–D350 | year = 2007 | pmid = 17932057 | pmc =2238832 }}
39. ^{{Cite journal | last1 = O'Boyle | first1 = N. M. | last2 = Guha | first2 = R. | last3 = Willighagen | first3 = E. L. | last4 = Adams | first4 = S. E. | last5 = Alvarsson | first5 = J. | last6 = Bradley | first6 = J. C. | last7 = Filippov | first7 = I. V. | last8 = Hanson | first8 = R. M. | last9 = Hanwell | first9 = M. D. | last10 = Hutchison | doi = 10.1186/1758-2946-3-37 | first10 = G. R. | last11 = James | first11 = C. A. | last12 = Jeliazkova | first12 = N. | last13 = Lang | first13 = A. S. D. | last14 = Langner | first14 = K. M. | last15 = Lonie | first15 = D. C. | last16 = Lowe | first16 = D. M. | last17 = Pansanel | first17 = J. R. M. | last18 = Pavlov | first18 = D. | last19 = Spjuth | first19 = O. | last20 = Steinbeck | first20 = C. | last21 = Tenderholt | first21 = A. L. | last22 = Theisen | first22 = K. J. | last23 = Murray-Rust | first23 = P. | title = Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on | journal = Journal of Cheminformatics | volume = 3 | issue = 1 | pages = 37 | year = 2011 | pmid = 21999342| pmc =3205042 }}
40. ^{{Cite journal | last1 = Guha | first1 = R. | last2 = Howard | first2 = M. T. | last3 = Hutchison | first3 = G. R. | last4 = Murray-Rust | first4 = P. | authorlink4 = Peter Murray-Rust| last5 = Rzepa | first5 = H. | authorlink5 = Henry Rzepa| last6 = Steinbeck | first6 = C. | authorlink6 = Christoph Steinbeck| last7 = Wegner | first7 = J. | last8 = Willighagen | first8 = E. L. | doi = 10.1021/ci050400b | title = The Blue Obelisk - Interoperability in Chemical Informatics | journal = Journal of Chemical Information and Modeling | volume = 46 | issue = 3 | pages = 991–998 | year = 2006 | pmid = 16711717| pmc = }}
41. ^{{Cite journal | last1 = Guha | first1 = R. | last2 = Howard | first2 = M. T. | last3 = Hutchison | first3 = G. R. | last4 = Murray-Rust | first4 = P. | authorlink4 = Peter Murray-Rust| last5 = Rzepa | first5 = H. | authorlink5 = Henry Rzepa| last6 = Steinbeck | first6 = C. | authorlink6 = Christoph Steinbeck| last7 = Wegner | first7 = J. | last8 = Willighagen | first8 = E. L. | doi = 10.1021/ci050400b | title = The Blue Obelisk - Interoperability in Chemical Informatics | journal = Journal of Chemical Information and Modeling | volume = 46 | issue = 3 | pages = 991–998 | year = 2006 | pmid = 16711717| pmc = }}
42. ^Metabolomics Society Board {{webarchive|url=https://web.archive.org/web/20140323164342/http://www.metabolomicssociety.org/board_of_directors |date=2014-03-23 }}, website of Metabolomics Society
43. ^Chemical Structure Association Newsletter, 2006, 12, http://www.csa-trust.org/news06/Issue12.pdf
44. ^http://www.watoc.net/watoc.members.html

External links

  • {{URL|www.steinbeck-molecular.de}}
  • {{URL|http://www.ebi.ac.uk/steinbeck}}
{{Authority control}}{{DEFAULTSORT:Steinbeck, Christoph}}

3 : Living people|German chemists|1966 births

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