词条 | COPASI |
释义 |
| name = COPASI | logo = | screenshot = | caption = | collapsible = | author = | developer = | released = {{Start date and age|2004|10|11}} | latest release version = 4.16 (Build 104) | latest release date = {{Start date and age|2015|08|19}} | programming language = C++ | operating system = Linux, macOS and Microsoft Windows | platform = Qt | size = | language = | status = | genre = | license = Artistic License | website = {{URL|http://www.copasi.org|copasi.org}} }} COPASI[1] is an open-source software application for creating and solving mathematical models of biological processes such as metabolic networks, cell-signaling pathways, regulatory networks, infectious diseases, and many others. HistoryCOPASI is based on the GEPASI[2] simulation software that was developed in the early 1990s by Pedro Mendes. The initial development of COPASI was funded by the Virginia Bioinformatics Institute, and the Klaus Tschira Foundation. Current development efforts are supported by grants from the National Institute of Health, the BBSRC, and the German Ministry of Education. Development teamCOPASI is the result of an international collaboration between the University of Manchester (UK), the University of Heidelberg (Germany), and the Virginia Bioinformatics Institute (USA). The project principal investigators are Pedro Mendes and Ursula Kummer. The chief software architects are Stefan Hoops and Sven Sahle. FeaturesCOPASI includes features to define models of biological processes, simulate and analyze these models, generate analysis reports, and import/export models in SBML format.
References1. ^{{Cite journal | last1 = Hoops | first1 = S. | last2 = Sahle | first2 = S. | last3 = Gauges | first3 = R. | last4 = Lee | first4 = C. | last5 = Pahle | first5 = J. | last6 = Simus | first6 = N. | last7 = Singhal | first7 = M. | last8 = Xu | first8 = L. | last9 = Mendes | first9 = P. | doi = 10.1093/bioinformatics/btl485 | last10 = Kummer | first10 = U. | title = COPASI--a COmplex PAthway SImulator | journal = Bioinformatics | volume = 22 | issue = 24 | pages = 3067–3074 | year = 2006 | pmid = 17032683| pmc = }} 2. ^{{Cite journal | last1 = Mendes | first1 = P. | authorlink1 = Pedro Pedrosa Mendes| title = GEPASI: A software package for modelling the dynamics, steady states and control of biochemical and other systems | journal = Computer Applications in the Biosciences (CABIOS) | volume = 9 | issue = 5 | pages = 563–571 | year = 1993 | doi = 10.1093/bioinformatics/9.5.563| pmid = 8293329}} External links
4 : Systems biology|Ordinary differential equations|School of Computer Science, University of Manchester|Software using the Artistic license |
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