| Year | Album | Chart Positions | Label | | US Country | US |
|---|
| 1957 | Foggy Mountain Jamboree | Columbia |
| 1958 | Country Music | Mercury |
| 1959 | Lester Flatt & Earl Scruggs |
| 1960 | Songs of Glory | Columbia |
| 1961 | Foggy Mountain Banjo |
| Songs of the Famous Carter Family |
| 1962 | Folk Songs of Our Land |
| 1963 | Hard Travelin' (The Ballad of Jed Clampett) | 115 |
| The Original Sound | Mercury |
| Flatt and Scruggs at Carnegie Hall | 7 | 134 | Columbia |
| 1964 | Recorded Live at Vanderbilt University | 10 |
| The Fabulous Sound of Lester Flatt & Earl Scruggs | 2 |
| 1965 | The Versatile Flatt & Scruggs |
| Great Original Recordings |
| 1966 | Town and Country | 15 |
| When the Saints Go Marching In |
| Flatt & Scruggs' Greatest Hits | 34 |
| Sacred Songs |
| 1967 | Strictly Instrumental (w/ Doc Watson) |
| Hear the Whistles Blow | 37 |
| 1968 | Changin' Times featuring Foggy Mountain Breakdown | 7 |
| Songs to Cherish |
| Original Theme From Bonnie & Clyde | 26 |
| The Story of Bonnie & Clyde | 23 | 187 |
| Nashville Airplane | 35 |
| 1970 | Final Fling | 45 |
| Breaking Out | 35 |
| Year | Single | Peak chart positions | Album | | US Country | US | CAN Country | CAN |
|---|
| 1949 | "Foggy Mountain Breakdown" | 9 | singles only |
| 1952 | "'Tis Sweet to Be Remembered" | 9 |
| 1959 | "Cabin in the Hills" | 9 |
| 1960 | "Crying My Heart Out Over You" | 21 |
| 1961 | "Polka on a Banjo" | 12 |
| "Go Home" | 10 |
| 1962 | "Just Ain't" | 16 |
| "The Legend of the Johnson Boys" | 27 | Folk Songs of Our Land |
| "The Ballad of Jed Clampett" | 1 | 44 | Hard Travelin' (The Ballad of Jed Clampett) |
| 1963 | "Pearl Pearl Pearl" | 8 | 113 | singles only |
| "New York Town" | 26 |
| 1964 | "You Are My Flower" | 12 | Recorded Live at Vanderbilt University |
| "My Sara Jane" | 40 | singles only |
| "Petticoat Junction" | 14 |
| "Workin' It Out" | 21 |
| 1965 | "I Still Miss Someone" | 43 | The Versatile Flatt & Scruggs |
| 1967 | "Nashville Cats" | 54 | singles only |
| "California Up Tight Band" | 20 |
| 1968 | "Down in the Flood" | 45 | 15 | Changing Times featuring
Foggy Mountain Breakdown |
| "Foggy Mountain Breakdown" | 58 | 55 | 90 |
| "Like a Rolling Stone" | 58 | 125 | Nashville Airplane |