词条 | PubMed |
释义 |
|title = PubMed |logo = |description = |scope = |organism = |center = United States National Library of Medicine (NLM) |laboratory = |pmid = |released = {{Start date and age|1996|1}} |standard = |format = |url = {{URL|https://www.ncbi.nlm.nih.gov/pubmed/}} |download = |webservice = |sql = |sparql = |webapp = |standalone = |license = |versioning = |frequency = |curation = |bookmark = |version= }}PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics. The United States National Library of Medicine (NLM) at the National Institutes of Health maintains the database as part of the Entrez system of information retrieval.[1] From 1971 to 1997, MEDLINE online access to the MEDLARS Online computerized database primarily had been through institutional facilities, such as university libraries. PubMed, first released in January 1996, ushered in the era of private, free, home- and office-based MEDLINE searching.[2] The PubMed system was offered free to the public starting in June 1997.[3] {{TOC limit|3}}ContentIn addition to MEDLINE, PubMed provides access to:
Many PubMed records contain links to full text articles, some of which are freely available, often in PubMed Central[5] and local mirrors such as UK PubMed Central.[6] Information about the journals indexed in MEDLINE, and available through PubMed, is found in the NLM Catalog.[7] {{As of|2018|12|06}}, PubMed has more than 29.1 million records going back to 1966, selectively to the year 1865, and very selectively to 1809; about 500,000 new records are added each year. {{As of|2013|02|14|alt=As of the same date}}, 13.1 million of PubMed's records are listed with their abstracts, and 14.2 million articles have links to full-text (of which 3.8 million articles are available, full-text for free for any user).[8] Approximately 12% of the records in PubMed correspond to cancer-related entries, which have grown from 6% in the 1950s to 16% in 2016.[9]Other significant proportion of records correspond to "chemistry" (8.69%), "therapy" (8.39%), and "infection" (5%).{{Cn|date=December 2018}} In 2016, NLM changed the indexing system so that publishers will be able to directly correct typos and errors in PubMed indexed articles.[10] CharacteristicsStandard searchesSimple searches on PubMed can be carried out by entering key aspects of a subject into PubMed's search window. PubMed translates this initial search formulation and automatically adds field names, relevant MeSH (Medical Subject Headings) terms, synonyms, Boolean operators, and 'nests' the resulting terms appropriately, enhancing the search formulation significantly, in particular by routinely combining (using the OR operator) textwords and MeSH terms. The examples given in a PubMed tutorial[11] demonstrate how this automatic process works: {{quote|Causes Sleep Walking is translated as ("etiology"[Subheading] OR "etiology"[All Fields] OR "causes"[All Fields] OR "causality"[MeSH Terms] OR "causality"[All Fields]) AND ("somnambulism"[MeSH Terms] OR "somnambulism"[All Fields] OR ("sleep"[All Fields] AND "walking"[All Fields]) OR "sleep walking"[All Fields])}}Likewise, {{quote|softA new PubMed interface was launched in October 2009 and encouraged the use of such quick, Google-like search formulations; they have also been described as 'telegram' searches.[12] By default the results are sorted by Most Recent, but this can be changed to Best Match, Publication Date, First Author, Last Author, Journal, or Title.[13] Comprehensive searchesFor optimal searches in PubMed, it is necessary to understand its core component, MEDLINE, and especially of the MeSH (Medical Subject Headings) controlled vocabulary used to index MEDLINE articles. They may also require complex search strategies, use of field names (tags), proper use of limits and other features; reference librarians and search specialists offer search services.[14][15] Journal article parametersWhen a journal article is indexed, numerous article parameters are extracted and stored as structured information. Such parameters are: Article Type (MeSH terms, e.g., "Clinical Trial"), Secondary identifiers, (MeSH terms), Language, Country of the Journal or publication history (e-publication date, print journal publication date). Publication Type: Clinical queries/systematic reviewsPublication type parameter allows searching by the type of publication, including reports of various kinds of clinical research.[16] Secondary IDSince July 2005, the MEDLINE article indexing process extracts identifiers from the article abstract and puts those in a field called Secondary Identifier (SI). The secondary identifier field is to store accession numbers to various databases of molecular sequence data, gene expression or chemical compounds and clinical trial IDs. For clinical trials, PubMed extracts trial IDs for the two largest trial registries: ClinicalTrials.gov (NCT identifier) and the International Standard Randomized Controlled Trial Number Register (IRCTN identifier).[17] See alsoA reference which is judged particularly relevant can be marked and "related articles" can be identified. If relevant, several studies can be selected and related articles to all of them can be generated (on PubMed or any of the other NCBI Entrez databases) using the 'Find related data' option. The related articles are then listed in order of "relatedness". To create these lists of related articles, PubMed compares words from the title and abstract of each citation, as well as the MeSH headings assigned, using a powerful word-weighted algorithm.[18] The 'related articles' function has been judged to be so precise that the authors of a paper suggested it can be used instead of a full search.[19] Mapping to MeSHPubMed automatically links to MeSH terms and subheadings. Examples would be: "bad breath" links to (and includes in the search) "halitosis", "heart attack" to "myocardial infarction", "breast cancer" to "breast neoplasms". Where appropriate, these MeSH terms are automatically "expanded", that is, include more specific terms. Terms like "nursing" are automatically linked to "Nursing [MeSH]" or "Nursing [Subheading]". This feature is called Auto Term Mapping and is enacted, by default, in free text searching but not exact phrase searching (i.e. enclosing the search query with double quotes).[20] This feature makes PubMed searches more sensitive and avoids false-negative (missed) hits by compensating for the diversity of medical terminology.[20] My NCBIThe PubMed optional facility "My NCBI" (with free registration) provides tools for
and a wide range of other options.[21] The "My NCBI" area can be accessed from any computer with web-access. An earlier version of "My NCBI" was called "PubMed Cubby".[22] LinkOutLinkOut, a NLM facility to link (and make available full-text) local journal holdings.[23] Some 3,200 sites (mainly academic institutions) participate in this NLM facility ({{As of|2010|03|lc=on}}), from Aalborg University in Denmark to ZymoGenetics in Seattle.[24] Users at these institutions see their institution's logo within the PubMed search result (if the journal is held at that institution) and can access the full-text. Link out is being consolodated with Outside Tool as of the major platform update coming in the Summer of 2019. [25] PubMed CommonsIn 2016, PubMed allows authors of articles to comment on articles indexed by PubMed. This feature was initially tested in a pilot mode (since 2013) and was made permanent in 2016.[26] In February 2018, PubMed Commons was discontinued due to the fact that "usage has remained minimal".[27][28] PubMed for handhelds/mobilesPubMed/MEDLINE can be accessed via handheld devices, using for instance the "PICO" option (for focused clinical questions) created by the NLM.[29] A "PubMed Mobile" option, providing access to a mobile friendly, simplified PubMed version, is also available.[30] askMEDLINEaskMEDLINE, a free-text, natural language query tool for MEDLINE/PubMed, developed by the NLM, also suitable for handhelds.[31] ==={{Visible anchor|PubMed identifier}}=== {{for|help using PubMed identifiers within Wikipedia|Wikipedia:PMID}}A PMID (PubMed identifier or PubMed unique identifier)[32] is a unique integer value, starting at The assignment of a PMID or PMCID to a publication tells the reader nothing about the type or quality of the content. PMIDs are assigned to letters to the editor, editorial opinions, op-ed columns, and any other piece that the editor chooses to include in the journal, as well as peer-reviewed papers. The existence of the identification number is also not proof that the papers have not been retracted for fraud, incompetence, or misconduct. The announcement about any corrections to original papers may be assigned a PMID. Alternative interfacesThe National Library of Medicine leases the MEDLINE information to a number of private vendors such as Embase, Ovid, Dialog, EBSCO, Knowledge Finder and many other commercial, non-commercial, and academic providers.[34] {{As of|2008|10}}, more than 500 licenses had been issued, more than 200 of them to providers outside the United States. As licenses to use MEDLINE data are available for free, the NLM in effect provides a free testing ground for a wide range[35] of alternative interfaces and 3rd party additions to PubMed, one of a very few large, professionally curated databases which offers this option. Lu[35] identifies a sample of 28 current and free Web-based PubMed versions, requiring no installation or registration, which are grouped into four categories:
As most of these and other alternatives rely essentially on PubMed/MEDLINE data leased under license from the NLM/PubMed, the term "PubMed derivatives" has been suggested.[35] Without the need to store about 90 GB of original PubMed Datasets, anybody can write PubMed applications using the eutils-application program interface as described in "The E-utilities In-Depth: Parameters, Syntax and More", by Eric Sayers, PhD.[46] Various citation format generators, taking PMID numbers as input, are examples of web applications making use of the eutils-application program interface. Sample web pages include [https://mickschroeder.com/citation/ Citation Generator - Mick Schroeder], [https://www.ultrasoundoftheweek.com/citation/ Pubmed Citation Generator - Ultrasound of the Week], [https://www.pmid2cite.com/ PMID2cite], and Cite this for me. Data mining of PubMedAlternative methods to mine the data in PubMed use programming environments such as Matlab, Python or R. In these cases, queries of PubMed are written as lines of code and passed to PubMed and the response is then processed directly in the programming environment. Code can be automated to systematically queries with different keywords such as disease, year, organs, etc. A recent publication (2017) found that the proportion of cancer-related entries in PubMed has risen from 6% in the 1950s to 16% in 2016.[47] The data accessible by PubMed can be mirrored locally using an unofficial tool such as MEDOC.[48] See also
References1. ^https://www.nlm.nih.gov/bsd/pubmed.html 2. ^{{cite web |title=PubMed Celebrates its 10th Anniversary |website=Technical Bulletin |publisher=United States National Library of Medicine |date=2006-10-05 |url=https://www.nlm.nih.gov/pubs/techbull/so06/so06_pm_10.html |accessdate=2011-03-22}} 3. ^{{cite journal | author = Lindberg DA | title = Internet access to the National Library of Medicine | journal = Eff Clin Pract | volume = 3 | issue = 5 | pages = 256–60 | date = 2000 | pmid = 11185333 | url = http://www.acponline.org/clinical_information/journals_publications/ecp/sepoct00/nlm.pdf | deadurl = yes | archiveurl = https://web.archive.org/web/20131102194044/http://www.acponline.org/clinical_information/journals_publications/ecp/sepoct00/nlm.pdf | archivedate = 2 November 2013 | df = dmy-all }} 4. ^{{cite web |title=PubMed: MEDLINE Retrieval on the World Wide Web |website=Fact Sheet |publisher=United States National Library of Medicine |date=2002-06-07 |accessdate=2011-03-22 |url=https://www.nlm.nih.gov/pubs/factsheets/pubmed.html}} 5. ^{{cite journal | author = Roberts RJ | title = PubMed Central: The GenBank of the published literature | journal = Proceedings of the National Academy of Sciences | volume = 98 | issue = 2 | pages = 381–382 | date = 2001 | pmid = 11209037 | pmc = 33354 | doi = 10.1073/pnas.98.2.381 | bibcode = 2001PNAS...98..381R }} 6. ^{{cite journal | display-authors = 4| author = McEntyre JR| author2 = Ananiadou S| author3 = Andrews S| author4 = Black WJ| author5 = Boulderstone R| author6 = Buttery P| author7 = Chaplin D| author8 = Chevuru S| author9 = Cobley N| author10 = Coleman LA| author11 = Davey P| author12 = Gupta B| author13 = Haji-Gholam L| author14 = Hawkins C| author15 = Horne A| author16 = Hubbard SJ| author17 = Kim JH| author18 = Lewin I| author19 = Lyte V| author20 = MacIntyre R| author21 = Mansoor S| author22 = Mason L| author23 = McNaught J| author24 = Newbold E| author25 = Nobata C| author26 = Ong E| author27 = Pillai S| author28 = Rebholz-Schuhmann D| author29 = Rosie H| author30 = Rowbotham R| author31 = Rupp CJ| author32 = Stoehr P| author33 = Vaughan P | title = UKPMC: A full text article resource for the life sciences | journal = Nucleic Acids Research | volume = 39 | issue = Database issue | pages = D58–D65 | date = 2010 | pmid = 21062818 | pmc = 3013671 | doi = 10.1093/nar/gkq1063 }} 7. ^{{cite web |title=NLM Catalogue: Journals referenced in the NCBI Databases |url=https://www.ncbi.nlm.nih.gov/nlmcatalog/journals |publisher=NCBI |date=2011}} 8. ^(Note: To see the current size of the database simply type "1800:2100[dp]" into the search bar at https://www.ncbi.nlm.nih.gov/pubmed/ and click "search".) 9. ^{{cite journal | author = Reyes-Aldasoro C | title = The proportion of cancer-related entries in PubMed has increased considerably; is cancer truly "The Emperor of All Maladies"? | journal = PLOS ONE | volume = 12 | issue = 3 | pages = e0173671 | date = 2017 | pmid =28282418 | pmc = 5345838 | doi = 10.1371/journal.pone.0173671 | bibcode = 2017PLoSO..1273671R }} 10. ^{{cite web|url=https://www.nlm.nih.gov/pubs/techbull/ja16/ja16_medline_pm_production.html|title=MEDLINE/PubMed Production Improvements Underway|publisher=}} 11. ^{{cite web |title=Simple Subject Search with Quiz|url=https://www.nlm.nih.gov/bsd/viewlet/search/subject/subject.html |publisher=NCBI |date=2010}} 12. ^{{cite journal | author = Clarke J| author2 = Wentz R | title = Pragmatic approach is effective in evidence based health care | journal = BMJ | volume = 321 | issue = 7260 | pages = 566–567 | date = September 2000 | pmid = 10968827 | pmc = 1118450 | doi = 10.1136/bmj.321.7260.566/a }} 13. ^{{Cite journal|last=Fatehi|first=Farhad|last2=Gray|first2=Leonard C.|last3=Wootton|first3=Richard|date=January 2014|title=How to improve your PubMed/MEDLINE searches: 2. display settings, complex search queries and topic searching|journal=Journal of Telemedicine and Telecare|volume=20|issue=1|pages=44–55|doi=10.1177/1357633X13517067|issn=1758-1109|pmid=24352897}} 14. ^{{cite journal | author = Jadad AR| author2 = McQuay HJ | title = Searching the literature. 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34. ^{{cite web|title=Leasing journal citations from PubMed/Medline |url=https://www.nlm.nih.gov/databases/journal.html |publisher=NLM |date=2011}} 35. ^1 2 {{cite journal | author = Lu Z | title = PubMed and beyond: A survey of web tools for searching biomedical literature | journal = Database | volume = 2011 | pages = baq036 | date = 2011 | pmid = 21245076 | pmc = 3025693 | doi = 10.1093/database/baq036 }} 36. ^{{cite journal | display-authors = 4| author = Fontaine JF| author2 = Barbosa-Silva A| author3 = Schaefer M| author4 = Huska MR| author5 = Muro EM| author6 = Andrade-Navarro MA | title = MedlineRanker: Flexible ranking of biomedical literature | journal = Nucleic Acids Research | volume = 37 | issue = Web Server issue | pages = W141–W146 | date = 2009 | pmid = 19429696 | pmc = 2703945 | doi = 10.1093/nar/gkp353 }} 37. ^{{cite journal | display-authors = 4| author = States DJ| author2 = Ade AS| author3 = Wright ZC| author4 = Bookvich AV| author5 = Athey BD | title = MiSearch adaptive pubMed search tool | journal = Bioinformatics | volume = 25 | issue = 7 | pages = 974–976 | date = 2009 | pmid = 18326507 | pmc = 2660869 | doi = 10.1093/bioinformatics/btn033 }} 38. ^{{cite journal | author = Smalheiser NR| author2 = Zhou W| author3 = Torvik VI | title = Anne O'Tate: A tool to support user-driven summarization, drill-down and browsing of PubMed search results | journal = Journal of Biomedical Discovery and Collaboration | volume = 3 | pages = 2 | date = 2008 | pmid = 18279519 | pmc = 2276193 | doi = 10.1186/1747-5333-3-2 }} 39. ^{{cite web |title=ClusterMed |url=http://demos.vivisimo.com/clustermed|publisher=Vivisimo Clustering Engine |date=2011}} 40. ^{{cite journal | display-authors = 4| author = Rebholz-Schuhmann D| author2 = Kirsch H| author3 = Arregui M| author4 = Gaudan S| author5 = Riethoven M| author6 = Stoehr P | title = EBIMed--text crunching to gather facts for proteins from Medline | journal = Bioinformatics | volume = 23 | issue = 2 | pages = e237–e244 | date = 2007 | pmid = 17237098 | doi = 10.1093/bioinformatics/btl302 }} 41. ^{{cite journal | author = Kim JJ| author2 = Pezik P| author3 = Rebholz-Schuhmann D | title = MedEvi: Retrieving textual evidence of relations between biomedical concepts from Medline | journal = Bioinformatics | volume = 24 | issue = 11 | pages = 1410–1412 | date = 2008 | pmid = 18400773 | pmc = 2387223 | doi = 10.1093/bioinformatics/btn117 }} 42. ^{{cite journal | display-authors = 4| author = Fontelo P| author2 = Liu F| author3 = Ackerman M| author4 = Schardt CM| author5 = Keitz SA | title = AskMEDLINE: A report on a year-long experience | journal = AMIA Annual Symposium Proceedings | volume = 2006 | pages = 923 | date = 2006 | pmid = 17238542 | pmc = 1839379 }} 43. ^{{cite journal | author = Fontelo P| author2 = Liu F| author3 = Ackerman M | title = MeSH Speller + askMEDLINE: Auto-completes MeSH terms then searches MEDLINE/PubMed via free-text, natural language queries | journal = AMIA Annual Symposium Proceedings | volume = 2005 | pages = 957 | date = 2005 | pmid = 16779244 | pmc = 1513542 }} 44. ^{{cite journal | display-authors = 4| author = Fontelo P| author2 = Liu F| author3 = Leon S| author4 = Anne A| author5 = Ackerman M | title = PICO Linguist and BabelMeSH: Development and partial evaluation of evidence-based multilanguage search tools for MEDLINE/PubMed | journal = Studies in Health Technology and Informatics | volume = 129 | issue = Pt 1 | pages = 817–821 | date = 2007 | pmid = 17911830 | url = http://booksonline.iospress.nl/Extern/EnterMedLine.aspx?ISSN=0926-9630&Volume=129&SPage=817 }} 45. ^{{cite journal | author = Hokamp K| author2 = Wolfe KH |authorlink2=Kenneth H. Wolfe| title = PubCrawler: Keeping up comfortably with PubMed and GenBank | journal = Nucleic Acids Research | volume = 32 | issue = Web Server issue | pages = W16–W19 | date = 2004 | pmid = 15215341 | pmc = 441591 | doi = 10.1093/nar/gkh453 }} 46. ^{{Cite web | author=Eric Sayers, PhD | title=The E-utilities In-Depth: Parameters, Syntax and More | url=https://www.ncbi.nlm.nih.gov/books/NBK25499/ | publisher=NCBI}} 47. ^{{cite journal | author = Reyes-Aldasoro C | title = The proportion of cancer-related entries in PubMed has increased considerably; is cancer truly "The Emperor of All Maladies"? | journal = PLOS ONE | volume = 12 | issue = 3 | pages = e0173671 | date = 2017 | pmid =28282418 | pmc = 5345838 | doi = 10.1371/journal.pone.0173671 | bibcode = 2017PLoSO..1273671R }} 48. ^{{cite web| url=https://github.com/MrMimic/MEDOC |title=MEDOC (MEdline DOwnloading Contrivance) |year=2017}} External links{{Wikidata property |1=P698}}
8 : American websites|Bibliographic databases and indexes|Biological databases|Databases in the United States|Medical search engines|National Institutes of Health|Online databases|United States National Library of Medicine |
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