| 词条 | DECIPHER (software) |
| 释义 |
| name = DECIPHER | logo = | screenshot = | caption = | developer = Erik Wright | released = | latest release version = 2.10.0 | latest release date = {{Start date|2018}} | latest preview version = | latest preview date = | status = Active |programming language = R, C | operating system = Unix, Linux, macOS, Windows | platform = IA-32, x86-64 | size = | language = English | genre = Bioinformatics | license = GPL 3 | website = {{URL|decipher.codes}} }} DECIPHER is a software toolset that can be used to decipher and manage biological sequences efficiently using the programming language R. Some functions of the program are accessible online through web tools. Features
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References1. ^{{cite journal |author=Wright ES |title=DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment |journal=BMC Bioinformatics |year=2015 |pmid=26445311 |doi=10.1186/s12859-015-0749-z |volume=16 |pmc=4595117 |pages=322}} 2. ^{{cite journal |vauthors=Noguera DR, Wright ES, Camejo P, Yilmaz LS |title=Mathematical tools to optimize the design of oligonucleotide probes and primers |journal=Applied Microbiology and Biotechnology |year=2014 |pmid=25359473 |doi=10.1007/s00253-014-6165-x |volume=98 |pages=9595–608}} 3. ^{{cite journal |vauthors=Wright ES, Yilmaz LS, Ram S, Gasser JM, Harrington GW, Noguera DR |title=Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates |journal=Environmental Microbiology |volume= 16|issue=5 |pages=1354–1365 |year=2014 |pmid=24750536 |doi=10.1111/1462-2920.12259}} 4. ^{{cite journal |vauthors=Wright ES, Vetsigian KH |title=DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures |journal=Bioinformatics |volume=32 |issue=10 |pages=1565–1567 |year=2016 |pmid=26803162 |doi=10.1093/bioinformatics/btw047}} 5. ^{{cite journal |vauthors=Wright ES, Yilmaz LS, Corcoran AM, Okten HE, Noguera DR |title=Automated Design of Probes for rRNA-Targeted Fluorescence In Situ Hybridization Reveals the Advantages of Using Dual Probes for Accurate Identification |journal=Applied and Environmental Microbiology |volume=80 |issue=16 |pages=5124–5133 |year=2014 |pmid=24928876 |doi=10.1128/AEM.01685-14 |pmc=4135741}} 6. ^{{cite journal |vauthors=Yilmaz LS, Loy A, Wright ES, Wagner M, Noguera DR |title=Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics |journal=PLOS ONE |year=2012 |pmid=22952791 |doi=10.1371/journal.pone.0043862 |volume=7 |pmc=3428302 |pages=e43862}} 7. ^{{cite journal |vauthors=Wright ES, Yilmaz LS, Noguera DR |title=DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences |journal=Applied and Environmental Microbiology |volume=78 |issue=3 |pages=717–725 |year=2012 |pmid=22101057 |doi=10.1128/AEM.06516-11 |pmc=3264099}} 8. ^{{cite journal |vauthors=Murali A, Bhargava A, Wright ES |title=IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences |journal=Microbiome |volume=6 |issue=140 |year=2018 |doi=10.1186/s40168-018-0521-5}} External links
2 : Bioinformatics software|Computational phylogenetics |
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