Honegger is a surname. Notable people with the surname include:

• Arthur Honegger (1892–1955), Swiss composer
• Blanche Honegger Moyse (1909-2011), American conductor
• Doug Honegger (born 1968), Canadian-born former Swiss professional ice hockey defenceman
• Elise Honegger (1839-1912), Swiss feminist and journalist
• Eric Honegger (born 1946), Swiss politician, member of the FDP.The Liberals party, and manager
• Fritz Honegger (1917–1999), Swiss politician
• Gottfried Honegger (1917–2016), Swiss artist and graphic designer
• Marc Honegger (1926-2003), French musicologist and choirmaster
• Sylvia Honegger (born 1968), Swiss cross country skier

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