请输入您要查询的百科知识:

 

词条 Wagner–Fischer algorithm
释义

  1. History

  2. Calculating distance

     Proof of correctness  Possible modifications  

  3. Seller's variant for string search

  4. References

In computer science, the Wagner–Fischer algorithm is a dynamic programming algorithm that computes the edit distance between two strings of characters.

History

The Wagner–Fischer algorithm has a history of multiple invention. Navarro lists the following inventors of it, with date of publication, and acknowledges that the list is incomplete:[1]{{rp|43}}

  • Vintsyuk, 1968
  • Needleman and Wunsch, 1970
  • Sankoff, 1972
  • Sellers, 1974
  • Wagner and Fischer, 1974
  • Lowrance and Wagner, 1975

Calculating distance

The Wagner–Fischer algorithm computes edit distance based on the observation that if we reserve a matrix to hold the edit distances between all prefixes of the first string and all prefixes of the second, then we can compute the values in the matrix by flood filling the matrix, and thus find the distance between the two full strings as the last value computed.

A straightforward implementation, as pseudocode for a function EditDistance that takes two strings, s of length m, and t of length n, and returns the Levenshtein distance between them, looks as follows. Note that the input strings are one-indexed, while the matrix d is zero-indexed, and [i..k] is a closed range.

int EditDistance(char s[1..m], char t[1..n])

   // For all i and j, d[i,j] will hold the Levenshtein distance between   // the first i characters of s and the first j characters of t.   // Note that d has (m+1) x (n+1) values.   let d be a 2-d array of int with dimensions [0..m, 0..n]     for i in [0..m]     d[i, 0] ← i // the distance of any first string to an empty second string                 // (transforming the string of the first i characters of s into                 // the empty string requires i deletions)   for j in [0..n]     d[0, j] ← j // the distance of any second string to an empty first string     for j in [1..n]     for i in [1..m]       if s[i] = t[j] then           d[i, j] ← d[i-1, j-1]        // no operation required       else         d[i, j] ← minimum of                    (                      d[i-1, j] + 1,  // a deletion                      d[i, j-1] + 1,  // an insertion                      d[i-1, j-1] + 1 // a substitution                    )     return d[m,n]

Two examples of the resulting matrix (hovering over an underlined number reveals the operation performed to get that number):

kitten
0 1 2 3 4 5 6
s1 substitution of 'k' for 's'|1}}2 3 4 5 6
i2 2 'i' equals 'i'|1}}2 3 4 5
t3 3 2 't' equals 't'|1}}2 3 4
t4 4 3 2 't' equals 't'|1}}2 3
i5 5 4 3 2 substitution of 'e' for 'i'|2}}3
n6 6 5 4 3 3 'n' equals 'n'|2}}
g7 7 6 5 4 4 delete'g'|3}}
Saturday
0 1 2 3 4 5 6 7 8
S1 'S' equals 'S'|0}}insert 'a'|1}}insert 't'|2}}3 4 5 6 7
u2 1 1 2 'u' equals 'u'|2}}3 4 5 6
n3 2 2 2 3 substitution of 'r' for 'n'|3}}4 5 6
d4 3 3 3 3 4 'd' equals 'd'|3}}4 5
a5 4 3 4 4 4 4 'a' equals 'a'|3}}4
y6 5 4 4 5 5 5 4 'y' equals 'y'|3}}

The invariant maintained throughout the algorithm is that we can transform the initial segment s[1..i] into t[1..j] using a minimum of d[i,j] operations. At the end, the bottom-right element of the array contains the answer.

Proof of correctness

As mentioned earlier, the invariant is that we can transform the initial segment s[1..i] into t[1..j] using a minimum of d[i,j] operations. This invariant holds since:

This proof fails to validate that the number placed in d[i,j] is in fact minimal; this is more difficult to show, and involves an argument by contradiction in which we assume d[i,j] is smaller than the minimum of the three, and use this to show one of the three is not minimal.

Possible modifications

Possible modifications to this algorithm include:

Seller's variant for string search

By initializing the first row of the matrix with zeros, we obtain a variant of the Wagner–Fischer algorithm that can be used for fuzzy string search of a string in a text.[3] This modification gives the end-position of matching substrings of the text. To determine the start-position of the matching substrings, the number of insertions and deletions can be stored separately and used to compute the start-position from the end-position.[4]

The resulting algorithm is by no means efficient, but was at the time of its publication (1980) one of the first algorithms that performed approximate search.[3]

References

1. ^{{cite book |author=Gusfield, Dan |title=Algorithms on strings, trees, and sequences: computer science and computational biology |publisher=Cambridge University Press |location=Cambridge, UK |year=1997 |isbn=978-0-521-58519-4 }}
2. ^{{cite journal |author=Allison L |title=Lazy Dynamic-Programming can be Eager |journal=Inf. Proc. Letters |volume=43 |issue=4 |pages=207–12 |date=September 1992 |url=http://www.csse.monash.edu.au/~lloyd/tildeStrings/Alignment/92.IPL.html |doi=10.1016/0020-0190(92)90202-7}}
3. ^{{Cite journal | last1 = Navarro | first1 = Gonzalo| doi = 10.1145/375360.375365 | title = A guided tour to approximate string matching | journal = ACM Computing Surveys | volume = 33| issue = 1| pages = 31–88| year = 2001 | pmid = | pmc = | url = http://repositorio.uchile.cl/bitstream/handle/2250/126168/Navarro_Gonzalo_Guided_tour.pdf| citeseerx = 10.1.1.452.6317}}
4. ^Bruno Woltzenlogel Paleo. An approximate gazetteer for GATE based on levenshtein distance. Student Section of the European Summer School in Logic, Language and Information (ESSLLI), 2007.
{{Strings}}{{DEFAULTSORT:Wagner-Fischer algorithm}}

2 : Algorithms on strings|String similarity measures

随便看

 

开放百科全书收录14589846条英语、德语、日语等多语种百科知识,基本涵盖了大多数领域的百科知识,是一部内容自由、开放的电子版国际百科全书。

 

Copyright © 2023 OENC.NET All Rights Reserved
京ICP备2021023879号 更新时间:2024/11/14 3:45:23