Joao Fernandes may refer to:

• João Fernandes (explorer), Portuguese explorer of the 15th century
• João Pedro Matos Fernandes (born 1967), Portuguese politician
• João Miguel Afonso Fernandes (born 1983), Portuguese footballer
• João Paulo Fernandes (born 1984), Portuguese Paralympic boccia player
• João Fernandes Lavrador (1453–1505), Portuguese explorer of the late 15th century
• João Fernandes (motorcycle racer) (born 1977), Grand Prix motorcycle racer from Portugal
• João Fernandes (cinematographer), cinematographer also known as Raoul Lomas
• João Fernandes (rower) (born 1976), Portuguese Olympic rower

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